| mature miRNA: AGCAGCTGCAGCATCTTCAGA species: Phaseolus coccineus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|207349783|gb|GD494395.1|GD494395 454PCS0122086 Scarlet Runner Bean globular-stage suspensor region Phaseolus coccineus cDNA, AGCAGCTGCAGCATCTTCAGA EST sequence (targeted fragment marked with yellow): TGGCTCCACCCGAAGTTCAAATTGATTTAGCAGCCCAACAACAACATGAGGCTGAGCTTGCTGCAGCTGCTAGTCAGCCCCTT | |||||||||
gi|207242150|gb|GD396705.1|GD396705 454PCS0024396 Scarlet Runner Bean globular-stage suspensor region Phaseolus coccineus cDNA, AGCAGCTGCAGCATCTTCAGA EST sequence (targeted fragment marked with yellow): ATCACAGATCATCCCATCTCAAGCTGCTGCTGCTGCTGATTCG | |||||||||
gi|207596880|gb|GD579485.1|GD579485 454PCS0207176 Scarlet Runner Bean globular-stage suspensor region size-fractionated Phaseolu AGCAGCTGCAGCATCTTCAGA EST sequence (targeted fragment marked with yellow): TGGCCGGGGGCTGAGCTTGCTGCAGCTGCTAGTCAGCCCCTTCCAGACGACGACGATGATACTTTTGAGTAGGAATTGTGCGTCTGTGGACCATTTT | |||||||||
gi|207288706|gb|GD443534.1|GD443534 454PCS0071226 Scarlet Runner Bean globular-stage suspensor region Phaseolus coccineus cDNA, AGCAGCTGCAGCATCTTCAGA EST sequence (targeted fragment marked with yellow): AGAATCTCCTGCTTTGGCTCCACCCGAAGTTCAAATTGATTTAGCAGCCCAACAACAACATGAGGCTGAGCTTGCTGCAGCTGCTAGTCA | |||||||||
gi|207301009|gb|GD453683.1|GD453683 454PCS0081375 Scarlet Runner Bean globular-stage suspensor region Phaseolus coccineus cDNA, AGCAGCTGCAGCATCTTCAGA EST sequence (targeted fragment marked with yellow): ATCTGAAGATGCTGCAGCTGCTGGCGCCATTGATTGATGAAAATAAAATCTTTGACTGCGATGTGTTGTTCGTGAAGAAGAAAGAGTG | |||||||||
gi|207551526|gb|GD535778.1|GD535778 454PCS0163469 Scarlet Runner Bean globular-stage suspensor region size-fractionated Phaseolu AGCAGCTGCAGCATCTTCAGA EST sequence (targeted fragment marked with yellow): TTGTAGAATCTCCTGCTTTGGCTCCACCCGAAGTTCAAATTGATTTAGCAGCCCAACAACAACATGAGGCTGAGCTTGCTGCAGCTGCTAGT | |||||||||
gi|207245594|gb|GD398707.1|GD398707 454PCS0026398 Scarlet Runner Bean globular-stage suspensor region Phaseolus coccineus cDNA, AGCAGCTGCAGCATCTTCAGA EST sequence (targeted fragment marked with yellow): GAGGCTGAGCTTGCTGCAGCTGCTAGTCAGCCCCTTCCAGACGACGACGA | |||||||||
gi|27390681|gb|CA903689.1|CA903689 PCSC16951 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar t AGCAGCTGCAGCATCTTCAGA EST sequence (targeted fragment marked with yellow): GACTCTAGCATCCTTTTATCCAAAACCATTACTATCAGAGCAGAAAGAACAAGAGGTTGCAGCAACAATGGCAGCCATTGCTGCTCTTCAGACCTCAATGACCGGTCTCTCACTCTCCTCCAACTCTTTCTTAGGCCAGCGCTTTTCCCCCATCACGTTCCCCTCTCTTCTTCCGGGTAAGTCAACAGAGAAGCAATGTCCCATTGTAATGAAGCTTAAACGATGGGAACGAAAGAAGTGTAAACCAAACAGCCTTCCTATCTTGCACAAAATGCATGTTAAACTTGGAGATACGGTGCAAATCATAACTGGAAGTGAAAGGGGTAAAGTTGGGGAGATTACTAGACTCTTCAAGCATAACAGCACAATAATAGTGAAAGATTTAAATTTGAAGACAAAGCATGTGAAGAGTAAAGAAGAGGGGGAACCGGGGCAAATTATTAAGATTGAAGGTCCTATCCACAGCTCAAATGTGATGCTGTACTCCAAAGATCAGAATGTAGCAAGCCGTGTGGGGCATAAAGTCCTTGATAATGGTAAAAGAGTCCGGTACCTTATAAAAACTGGAGAAATAATTGATAGTGCAGAGAATTGGAAGAAACTGAAGGATGAGACTACTAAGAAACCTGAAGAAGCTGCTGCTGCTGC | |||||||||
gi|207273900|gb|GD427611.1|GD427611 454PCS0055302 Scarlet Runner Bean globular-stage suspensor region Phaseolus coccineus cDNA, AGCAGCTGCAGCATCTTCAGA EST sequence (targeted fragment marked with yellow): CCACCCGAAGTTCAAATTGATTTAGCAGCCCAACAACAACATGAGGCTGAGCTTGCTGCAGCTGCTAGTCAGCCCCCTCAGACGACGACGA | |||||||||
gi|207202715|gb|GD356164.1|GD356164 454PCEP0066321 Scarlet Runner Bean globular-stage embryo-proper regions Phaseolus coccineus AGCAGCTGCAGCATCTTCAGA EST sequence (targeted fragment marked with yellow): CCAACAACAACATGAGGCTGAGCTTGCTGCAGCTGCTAGTCAGCCCCTTCCAGACGACGACGATGATACTTT | |||||||||
gi|207184404|gb|GD339498.1|GD339498 454PCEP0049654 Scarlet Runner Bean globular-stage embryo-proper regions Phaseolus coccineus AGCAGCTGCAGCATCTTCAGA EST sequence (targeted fragment marked with yellow): GGCTGAGCTTGCTGCAGCTGCTAGTCAGCCCCTTCCAGACGACGACGATGATACTTTGAG | |||||||||
gi|27383835|gb|CA896844.1|CA896844 PCEP00684 Scarlet Runner Bean Embryo-Proper Region Phaseolus coccineus cDNA 5' similar to Pho AGCAGCTGCAGCATCTTCAGA EST sequence (targeted fragment marked with yellow): GAGAAGGACTAGTTTTGGGGGTTAGTTCAAGACTGATATCACATAGCAAAGATGGCATCAATCACCATGGCAGCATCACTCATTGGCAGCTCAGTCATCAGCAACCGGTCCCCGGTTGCATCCCCAAGGAGGCTGGTGGTGGCAAATGCTTCCAAAGCAGTTGAAGGAGAGAAGACAAGGTTCAGTAGTGAGAATGACAAGGAGGGCAACAATGGAAGGAGGAACATGATGTTTGCAGCTGCTGCAGCAGCTGTTTGCTCTGTTGCTGGGATGTCCATGGCTGATGAGCCCAAACGTGGCACTCCTGAAGCTAAGAAAGTCTATTATCCTATTTGTGTCACCATGCCAACAGCCAGGATTTGTCACAAATGAGGCCTTAGGCTGTATCTACCAAAAGAACAACGGCAATGTAATGTTTTCCTTTTCATATGATGATCTTTCGTCTCTCTGTACTATTTGTTCATGAAACAATCTACTTTGCCTTTTGTCTT | |||||||||
gi|207205454|gb|GD360118.1|GD360118 454PCEP0070275 Scarlet Runner Bean globular-stage embryo-proper regions Phaseolus coccineus AGCAGCTGCAGCATCTTCAGA EST sequence (targeted fragment marked with yellow): GGCTGAGCTTGCTGCAGCTGCTAGTCAGCCCCTTCCAGACGACGACGATGATACTTTTGAGTAGGAATTGTGCGTCTGTGGACCATTTTCCTTAGTTA | |||||||||
gi|207328201|gb|GD482715.1|GD482715 454PCS0110419 Scarlet Runner Bean globular-stage suspensor region Phaseolus coccineus cDNA, AGCAGCTGCAGCATCTTCAGA EST sequence (targeted fragment marked with yellow): CAGCCCAACAACAACATGAGGCTGAGCTTGCTGCAGCTGCTAGTCAGCCCCTTCCAGACGACGACGATGATACTTTTGAGTAGGAATTGTG | |||||||||
gi|27394912|gb|CA907920.1|CA907920 PCSC12517 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar t AGCAGCTGCAGCATCTTCAGA EST sequence (targeted fragment marked with yellow): GCTCCTCTCTCAGTCACCTCTCTCAGTCACAGCTTTCACCATGGCTTTGCCAAATCAGCAAACAGTTGACTACCCAAGTTTCAAGCTCGTCATCGTCGGTGACGGTGGGACAGGAAAGACAACTTTCGTGAAGAGACATCTCACCGGTGAATTTGAGAAGAAATATGAACCCACTATTGGTGTGGAGGTTCATCCGTTGGATTTTTTCACGAACTGTGGAAAGATTCGTTTCTACTGTTGGGATACTGCCGGGCAAGAGAAGTTTGGTGGTCTCAGGGATGGATATTATATCCATGGGCAATGTGCGATAATCATGTTTGATGTTACTGCTCGGCTAACATACAAAAATGTCCCTACCTGGCACCGTGATCTTTGTCGGGTTTGTGAGAACATCCCAATTGTTCTTTGTGGTAACAAGGTTGATGTAAAGAATAGGCAAGTGAAGGCCAAGCAGGTTACTTTTCACAGAAAGAAGAATTTGCAGTATTATGAGATATCTGCAAAGAGCAACTATAATTTTGAAAAGCCATTCTTGTACTTGGCTAGGAAACTTGCAGGAGATCCTAACTTGCACTTTGTAGAATCTCCTGCTTTGGCTCCACCCGAAGTTCNAATTGATTTAGCAGCCCAACAACACATGAGGCTGAGCTTGCTGCAGCTGCTAGTCAGCCCCTTCAGACGACGACGATGATACTTTT | |||||||||
gi|207338171|gb|GD491886.1|GD491886 454PCS0119595 Scarlet Runner Bean globular-stage suspensor region Phaseolus coccineus cDNA, AGCAGCTGCAGCATCTTCAGA EST sequence (targeted fragment marked with yellow): GCTTTGGTTCCACCCGAAGTTCAAATTGATTTAGCAGCCCAACAACAACATGAGGCTGAGCTTGCTGCAGCTGCTAGTCAGCCCCTT | |||||||||
gi|27394916|gb|CA907924.1|CA907924 PCSC17135 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar t AGCAGCTGCAGCATCTTCAGA EST sequence (targeted fragment marked with yellow): GGTTACCCTGATCTTTGTCGGGTTTGTGAGAACATCCCAATTGTTCTTTGTGGTAACAAGGTTGATGTAAAGAATAGGCAAGTGAAGGCCAAGCAGGTTACTTTTCACAGAAAGAAGAATTTGCAGTATTATGAGATATCTGCAAAGAGCAACTATAATTTTGAAAAGCCATTCTTGTACTTGGCTAGGAAACTTGCAGGAGATCCTAACTTGCACTTTGTAGAATCTCCTGCTTTGGCTCCACCCGAAGTTCAAATTGATTTAGCAGCCCAACAACAACATGAGGCTGAGCTTGCTGCAGCTGCTAGTCAGCCCCTTCCAGACGACGACGATGATACTTTTGAGTAGGAATTGTGCGTCTGTGGACCATTTTCCTTAGTTACTGGTATTTGTGTATGCTACAATATATGTTTTTTGGGGTTGTGTATTATTGATATTTTTGGACATGGATTTGAGGTTTTAAATTCAATCATTATGAGGTGATTTGAT | |||||||||