| mature miRNA: TTGACAGAAGATAGAGAGCAT species: Phaseolus coccineus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|27386057|gb|CA899066.1|CA899066 PCEP04501 Scarlet Runner Bean Embryo-Proper Region Phaseolus coccineus cDNA 5' similar to (AL TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): GGGATTACCCGTCCCCCACANAACCAAAGCCAAAGAAGCATCACAAATGTTCGGCAGAATCAGGGCATCGACTTCATCATTGGAAACCTTAGAGGGTTCTCCTTCCAAGATTCTCAAAGATGACACTCTCTCCATCTACGAGGCTACTCTCATGAAGCTAAAGATTGGTGCGCGACTCGATACAAGTGAGGTTATAGATGATTCTTCAGTTAGTTCACCTTGTGCTAAAGAAGCAAACCAGCCAGATTTTAATCCAGAAAGCACTTCAAGTCCCGAGACAACGATGATGGACACCGAGTCTGATAACTCTTCGCCTAGGGTTAGTGACATTGTTTCTAGTGGGAACTCGGAACAGAGAAGACAAGTTAACCTTTCAATTCTAAATTTCTTCAAAGTTGTGGATACCGGACATGAACGTGCTCTATCTTCTGTAAAGACAGCAACTTCAACGGAGAATGGAAGTTCTGAATCTATCTCATCAACTTCTGTTGAATATGATTACGGAAGTGAAGTGGTCGGTGTTCAAATTTTGCAAGATTGTGAAATGTCGGATTAAAGATGTATTTATGACCT | |||||||||
gi|207242427|gb|GD398422.1|GD398422 454PCS0026113 Scarlet Runner Bean globular-stage suspensor region Phaseolus coccineus cDNA, TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): TCTTAGGTGAAGCGAGCAAGAACAAATAATTTAAATAATGTCTCTCATGTTATTGGCCTATCACAAGCTCTCTATCTTCTGTCAATTTTTTCCTATATATA | |||||||||
gi|27389630|gb|CA902638.1|CA902638 PCSC19659 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar t TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): AAAGAGGAAGAGGAAGAGGTTGAGACGGGTTTTGGAGAAGAAGGAAGGATGAATCACAGAGTAATGACAGATCTCTATGGAAAGAAAGGGTCCAAAGCTGGAGGCTCAATGCCACCTTCTTGTCAGGTAGATAACTGTGATGCTGATCTAAGTGAAGCTAAGCAGTATCACAGAAGGCACAAGGTTTGCGAGTACCATGCCAAGGTTCATTCCGTACTCATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTATTTTATTCCATGAGCTGTCTGAATTTGATGAATCAAAAAGGAGTTGTAGAACACGATTGGTTGGCCATAATGAGAGGCGTCGCAAAAATGCAGTTGACTGTCGTGGAGAATAATTTCTTCTATGTAACCATGAACATTAATAAACCTTGAGGCAAGCATGTGATTGAAATAAAGTTTCCCATTGAGATCTTGAAACTCAAATCACTGTTGCTGGCCTCAAAGGATGCTCTCTATCTTCTGTCAATATTTTCGTATGCTACGATTGTTGTTATAAGTTACAACTATGGATGATTTCCACTTCAAATTTTACTACATTTTGGCTTGAGAAAGATGGAATAAAGGGATTTTAGTTGAGT | |||||||||
gi|207534707|gb|GD518457.1|GD518457 454PCS0146148 Scarlet Runner Bean globular-stage suspensor region size-fractionated Phaseolu TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): AAGCCATTTGTCTTAGGTGAAGCGAGCAAGAACAAATAATTTAAATAATGTCTCTCATGTTATTGGCCTATCACAAGCTCTCTATCTTCTGTCAATTTTTT | |||||||||
gi|207298128|gb|GD451816.1|GD451816 454PCS0079508 Scarlet Runner Bean globular-stage suspensor region Phaseolus coccineus cDNA, TTGACAGAAGAT-AGAGAGCAT EST sequence (targeted fragment marked with yellow): GAAACTCAAATCACTGTTGCTGGCCTCAAAGGATGCTCTCTAATCTTCTGTCAATTA | |||||||||