| mature miRNA: GTATAGCATCATGAGCAATCA species: Phaseolus vulgaris database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|171488529|gb|FE698531.1|FE698531 Pv023D_M13R_B01.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA seque GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TCAGAGTGTAATAGCAGTGCAGCTGGTGGGGCATTCAAGAAAGCTAGGGTTCAACCGCCCACAACGCAGACGACCTTCAAGGTTAGGAAGGAGAAATTAGGTGACAAAATTACAGCCCTTCATCAACTCGTTTCCCCCTTTGGAAAGACTGACACAGCGTCTGTCTTATTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTGGGCACTGGATCAGGAAACATCAGGCACCAACAATCTGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCCGGTCAGTTGCTGAATGAAAACTGTTTGAAGAGGAAAGCAACTAGTGAGCAGCAGGATTCTGAAGAAGAGGCAAAGAAGGACCTAAGGAGTAGAGGGTTGTGTCTGGTTCCAGTGTCATGCACACTGCAAGTTGGAAGTGAAAATGGAGCTGATTATTGGGCACCAGCTTTTGGAGGAGGGTTTCGGTAGATGAAGCTAATTTACCCATATCAATATATGTGGCAGCATACAGAAGAACAAATTCATGGAGATTGTATAACATCATTAGCAGTCAATCTGCTGCAAAACCTAAGGCTGATTGCTCATGATGCTATACACCATTCCTGAATAAAATCTGTGCTGTCATGTCGAGTAGTATATATTTGCCACCCCATGTTAAGACTCTTAATTCATGAAAATCAAGCTTTATTTTGTTTTCACTAGCTTAAGGTGTATGTATAAGATTATTTACATATGCAATAACTGTATGATTATTTTC | |||||||||
gi|171624108|gb|FE698527.1|FE698527 Pv046A_M13R_H01.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA seque GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): ATGTTAGATTTCTCTAACAGCAACACAGATGCAAGGCATCCACCACCAGATCGATCTTCTGAGTGCAATAGCAGTGCAGCTGGTGGGGCACTGAAGAAAGCTAGGGTTCAACCCTCTGGCACAACACAGGCCACATTCAAGGTCAGGAAGGAGAAGTTAGGTGACAGAATTACTGCCCTTCATCAGCTCGTTTCCCCATTTGGGAAGACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTGAGTGGTGGACCAGGGAATGGGAGGCAGCAGAATTCTGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCTGGTCAGCTGCTGAATGAGAACTGCTTGAAAAGGAAAGCAGCAGGAGAACCGGATACTCAGGAAGAACAACAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTGGTTCCTGTGTCATGCACACTGCAAGTTGGGAGTGACAATGGAGCAGACTATTGGGCCCCTGCCCTAGGAGGGGGCTTTCGTTAGGACAACTTTACAATTAGGGCAGCATTTACATATAGATATGGTAGCATGCAGAGAGATAAATTCATGGAAATGATATAACATCATGAGCAGTCAATCTGCTAAAAAAAATCTAAGGCTGATTGCTCATGATGCTATACTTCATTCCTGAATAAAGTGTGTGCTAGCTAGCACTGACAAGTATTTGCCAGCCCTTAGAAGACTTCATAATTCATGCAAATCAAGCTTAGTTTTCTTTGTTTTCGTTAGCTTAAGTAAGATGGTGCTACGTACTAATGCGTTATGTTTCAATGTATATGCAATATTTGTATGATTAATCATTTGAATTTGCTACTCT | |||||||||
gi|312057211|gb|GW891093.1|GW891093 PVUSE1NG-UP-002_N12_18JULY2008_036 PVUSE1NG Phaseolus vulgaris cDNA, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GGCAAATTCAAATGATTAATCATACAAATATTGCATATACATTGAAACATAACGCATTAGTACGTAGCACCATCTTACTTAGCTAACGAAAACAAAAAAAACTAAGCTTGATTTGCATGAATTATGAAGTCTTCTAAGGGCTGGCAAATACTTGTCAGTGCTAGCTAGCACACACTTTATTCAGGAATGAAGTATAGCATCATGAGCAATCAGCCTTAAATTTTTTTTTTAGCAAATTGACTGCTCATGATGTTATATCATTTCCATGAATTTATCTCTCTGCATGCTACCATATCTATATGTAAATGCTGCCCTAATTGTAAAGTTGTCCTAACGAAAGCCCCCTCCTAGGGCAGGGGCCCAATAGTCTGCTCCATTGTCACTCCCAACTTGCAGTGGGCATGACACAGGAACCAGACACAACCCTCTACTCCTCAGCCCCTTCTGTTGTTCTTCCTGAGTATCCGGTTCTCCTGCTGCTTTCCTTTTCAAGCAGTTCTCATTCAGCAGCTGACCAGGGTCTTCAGGGAATATACAATTCTTCTCTCCTTGAACAGAATTCTGCTGCCTCCCATTCCCTGGTCCACCACTCAAGTATGGTAAGCTAAGGGCCTCAATTTGACTCTGAAGGAATCTGATATACCCAATAGCTTCTAACAAGACAGAGGCTGTGTCAGTCTTCCCAAATGGGGAAACGAGCTGATGAAAGGGCAGTAATTCTGTCACCTAACTTCTCCTTCCTGACCTTGAATGT | |||||||||
gi|171488528|gb|FE698530.1|FE698530 Pv028D_M13R_H07.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA seque GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GAGTGCAATAGCAGTGCAGCTGGTGGGGCACTGAAGAAAGCTAGGGTTCAACCCTCTGGCACAACACAGGCCACATTCAAGGTCAGGAAGGAGAAGTTAGGTGACAGAATTACTGCCCTTCATCAGCTCGTTTCCCCATTTGGGAAGACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTGAGTGGTGGACCAGGGAATGGGAGGCAGCAGAATTCTGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCTGGTCAGCTGCTGAATGAGAACTGCTTGAAAAGGAAAGCAGCAGGAGAACCGGATACTCAGGAAGAACAACAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTGGTTCCTGTGTCATGCACACTGCAAGTTGGGAGTGACAATGGAGCAGACTATTGGGCCCCTGCCCTAGGAGGGGGCTTTCGTTAGGACAACTTTACAATTAGGGCAGCATTTACATATAGATATGGTAGCATGCAGAGAGATAAATTCATGGAAATGATATAACATCATGAGCAGTCAATCTGCTAAAAAAAAATCTAAGGCTGATTGCTCATGATGCTATACTTCATTCCTGAATAAAGTGTGTGCTAGCTAGCACTGACAAGTATTTGCCAGCCCTTAGAAGACTTCATAATTCATGCAAATCAAGCTTAGTTTTCTTTGTTTTCGTTAGCTTAAGTAAGATGGTGCTACGTACTAATGCGTTATGTTTCAATGTATATGCAATATTTGTATGATTAATCATTTGAATTTGCTACTCTTTTAGCAGCATTAATTG | |||||||||
gi|312061427|gb|GW888439.1|GW888439 PVUSE1NG-RP-022_H14_15MAY2009_057 PVUSE1NG Phaseolus vulgaris cDNA, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTGAGTGGTGGACCAGGGAATGGGAGGCAGCAGAATTCTGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCTGGTCAGCTGCTGAATGAGAACTGCTTGAAAAGGAAAGCAGCAGGAGAACCGGATACTCAGGAAGAACAACAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTGGTTCCTGTGTCATGCACACTGCAAGTTGGGAGTGACAATGGAGCAGACTATTGGACCCCTGCCCTAGGAGGGGGCTTTCGTTAGGACAACTTTACAATTAGGGCAGCATTTACATATAGATATGGTAGCATGCAGAGAGATAAATTCATGGAAATGATATAACATCATGAGCAGTCAATCTGCTAAAAAAAAAATCTAAGGCTGATTGCTCATGATGCTATACTTCATTCCTGAATAAAGTGTGTGCTAGCTAGCACTGACAAGTATTTGCCAGCCCTTAGAAGACTTCATAATTCATGCAAATCAAGCTTAGTTTTCTTTGTTTTCGTTAGCTTAAGTAAGATGGTGCTACGTACTAAATGCGTTATGTTTCAATGTATATGCAATATTTGTATGATTAATCATTTGAATTTGCTACTCTTTTAGCAGCATTAATTGAACTGATCCATGACCATTATTATGCC | |||||||||