mature miRNA: TCATCATCATCATCATCTTAT species: Phaseolus vulgaris database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|312056857|gb|GW890739.1|GW890739 PVUSE1NG-RP-1005_L10_23SEPT2008_037 PVUSE1NG Phaseolus vulgaris cDNA, mRNA sequence TCATCATCATCATCATCTTAT EST sequence (targeted fragment marked with yellow): GGAGGAAGAAGGGGATTATTACGAGGATACTGAGGAGGAGGATGATGGAGGATTGTTACTTGATGAACTGTGTGCTGGGTTGAACAACATCAGCGTGAATGAGAAAGGTTGTGGGAAGCACACAAGGTTTGTTTACGACAGTGAGGATGAGCTTGTGGAGAAGGTGGTTGAGTCTTGTGCTTCCTCTGATGTTGTGCATTTGAAGGGGTTGCCAACACCCAAAGGAAAGCACCTTCGCTTCCCTGAGGAGGAAGAAGAAAACTGTAGTGCGTGATTTTGATTGGTGATGATGATGATGATGCTGTGAGTTGTGGGTTGGTTGCTTCGGTTGTCTTTCTTGACACCACTTTCCTCTTTTGGTTGGCCATTGTTTTGTTCCTGAATCTGTTCAGGGATTTATTAATGCTGGTTGGAAGCAAATAATGTTGCTTTTCATTTATCAATAAACTTTGGTGATCTAAAATC | |||||||||
gi|171605362|gb|FE711278.1|FE711278 Pv036B_M13F_C10.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA seque TCATCATCATCATCATCTTAT EST sequence (targeted fragment marked with yellow): TCAGCTAGCACTCCTACTTCAATAATTGTACACAGATGCAATTTCAAGATCGGACCCAACAACCATCCACTTCTCAACTCCGATCTATGCCGTCATCAAGAAAAGATACAGTAGAAAAAGAAGAAGATGAAGATGATGAAGAAGAAGATGATGATGATGAAGATGAAGATGATAAAGAAGAAGAAGATGATGATGACCCAATTGATTTGCTATCTTCTCAATCTAAACTCCTCAGTCGAAAAAATTTCAAACCTTATTACTCATCCAAGCATTCCTCTGTTTCTCTATTGAATCCGATCGAAGAATATCCGTTGACAGAAGTCGAATCAGTAAATAGATCCAGTCCAGAGTCCGATTTTTTATTGAATCGATTCAATCAACTCACTCTTTCAAAGTCAAGACTCACAAAATCCAAACGGTATCCTAGGAAGTGGCCAACTTCTTTATCAACAGCTCAACAGCTTCTTCTCCAGGAAGAATTACAATTCAATAGCGGTGATACAAATCAAAGTCAGAAAAAGTATGAAATACCAGGAGCAAGCTGTGAAATTAAAGAACTCCAAATACTTACCAGTTCCAATCAATGGCTAAATGATAAAATTATCAATTTTTACGGTGCTTTGATCAATAACAAGAATAGTAACATCTTGAATTCTGAACAAATGGGATATCCTCCTGATCCAGATAAGATTAGTTTGAAAGTATATTGTTTTTCTACCTACTTTATGACTAAATTTGATCGTGATGGTTATCAAGGTGTCGCGAGATGGACCANAAAGGTTGATTTGTTTG | |||||||||
gi|187432915|gb|FG231402.1|FG231402 pvreacc010004_C1_M13rev_phred13_vc root hairs of Phaseolus vulgaris harvested 24 hours after TCATCATCATCATCATCTTAT EST sequence (targeted fragment marked with yellow): GCGGGGACAAACACCCTGTTTTGGCTTCGATTCGAACAACATCTTCCTCTTTTCTTCTGTTGAGGATAGCGATGATGAGGATGGAGTTGAGTATGATGAGGATGATGACGATGATGATGACGATGAGGAGGAAGTGGATAATGATGAGGGTGATTTTGCGGAGCCGGAGAGTACCTAAAAATTGTGTAATCTATGGTCTGTGCCTGGCTTCAGATTAGAAGGTTCGTTTGGTTTGCATGAGAAGCAGTGTATAATACTTTACAGAACCAGTCTCCTGAATCCCTTCTGTTCTTTACTGTTATGAGCCTTGTGCCAATAAAATGCATGTAAATTTGAATGT | |||||||||
gi|312044522|gb|GW908484.1|GW908484 PVUSE4NG-RP-008_I06_30MAR2009_023 PVUSE4NG Phaseolus vulgaris cDNA, mRNA sequence TCATCATCATCATCATCTTAT EST sequence (targeted fragment marked with yellow): GAATCTGAGAAGTCAGTATCTGAGGTGAATGATGAGGATGATGATGAGGAGGGCAGTGGCGAGGAGGAGGATGATGATTAGAGAGTGGACTGATAACAATTTATGTAGGTTTTGATGATTTGGATCATCTTTTGTAGGTGGTCTGGTCATTTCCTGATGATAAACAAACATGTTTCTTTCTTCCAGAAAAATATTTCTCTGCTCCCTCCGTAAAATTGTTTTGTCTGTCCAAAACGTGAATAGTTGAAAGATGGGAGATCTTTATTTGTACTTCTAAATCCAACTGCTTAGTTAAGGGGTGCTTATCTTTTGTAGAGCTTTTAGTTTGATTTAGTTCTCTTGTTGAAATCTGGTTAAGTTTGTATGAATATAATTGGCTTATCTTCC | |||||||||
gi|171560284|gb|FE688501.1|FE688501 Pv015D_M13R_E04.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA seque TCATCATCATCATCATC-TTAT EST sequence (targeted fragment marked with yellow): CATGATGGTACTGATGTGGATGAGGATGATGACGAGGATGATGATGATGATGAAGATGATGATAATGATGAGTACGAGGATGAAGATGCATTTGATGTCCATGCTCATGCTAGTGCTGGAGAACATGATAATCCCAGCATTGAATTTGACCCAGATGTTTTTTCAAGCGACGAAGCATATGCAAGAGCATTACAGGAAGCTGAAGAGAGGGAGATGGCAGCTAGATTGTTGGCTCTTGCTGGGATAAATGATCGGGAGGCGGAGGACATAGAGGAACATGGTGCTAATTCTCAGGATGCTTGGGAGGACGTTGATCCAGATGAACTTTCATACGAGGAGTTACTGGCATTGGGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGACACTATTGCCTGTTTGCCTTCACTCAACTACAAGATTGGGAGCGATCAGCATGGAAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTTTGAGGATGGTGAATCTTTAACACATCTTTCCTGCAAACATCTGTACCATCCTGAGTGTATCAACAATTGGTTGAAAATAAACAAGGTTTGCCCAGTCTGTAGTACCGAGGTATCTGCTTCTGGGAGCAACTTGTAGGAGGGATTTAATAGATGTTCTCCACTTCAAATTGAAGAAAAGTTGTGCAAGTTGGGGCCTAATATCCCCTTATTTTAATAGCATTGCCATGTTGGGGGAGATAGTCTTGTTTCCAGCTCCTTCGTTTTAAATGTAACATTAACTTTTGGAACCAGCTCTCTAGAGTCTAGATTGTCTTTTTTAATGGAATGAATGGCATT | |||||||||
gi|171630861|gb|FE689615.1|FE689615 Pv012C_M13R_D08.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA seque TCATCATCATCATCATC-TTAT EST sequence (targeted fragment marked with yellow): ATGAACCTGTGGTTAGTTTGTCGCGTAAGAAGGCATCGAACAAAGGAGGTGGTAGTTTGTTCAATGCATCAGCTTTTGTTGCTATCGATGATGATGATGATGATGATGATGCTGGTGGTGAGGAGGAGGAGGAGGAGGATGAGCCGGTGGTTAGTTTTACTGGAAAGAAAAAGTCCTCGAAGGGTTCGAAGAAAAGCGGTGGTAGTTTGTTCGCTGCCTCGGCTTTTGATGCTATTGATGATGGTGGGGATGGTGATGTGGTGGATGATAAGAATAACGATTTTGATGACGATGAACCTGTTATTGCTTTCACGGGGAAGAAGAAGTCTTCCAAATCGGT | |||||||||
gi|171616777|gb|FE686616.1|FE686616 Pv010A_M13R_G11.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA seque TCATCATCATCATCATCTTAT EST sequence (targeted fragment marked with yellow): AATATATCAACGACTTGAAGACTTTGTTGGACCAAGATGAAAGAGTTATTCGGCATCTTGTGATAAAGAGGGACGAGGCAATCACTGAAGATTGCCCTCCACCTCCGGAGTTTCATACTCTGCGTGCAAATGCAGACGATATCGAGGATGAAGAATTTGATGAAGAGTATGACGATGACTGGGATGGTGAAGACGAGGTTGATGGTGATGATGATGGTATTATATATTTAGATGGTGATGAAGATGAAGACATGGATTCAAGAAATGAGACATCTGCAAATGTTACACTAGCAGAAGAAACAAGAGAGTTGAGGGCTGAGAACGTAGGTAGGTAAGTAAGTGTTATCTTTTGTCCTTCATTCTTTTGTTTCTTGGATTCCATAGAAATGTACGACGTTATGCATCTAAAATATAGGATTATCTC | |||||||||
gi|171563887|gb|FE698705.1|FE698705 Pv024A_M13F_D06.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA seque TCATCATCATCATCATCTTAT EST sequence (targeted fragment marked with yellow): GATAATGTCCCAGATCTTGGGTGGTTGCGTGGTGTTTCATTCCCTAGCGTGGAAGGTGGGGATTGGTTTGGTTCGTACTGTGCAAGAGTGAATTAGCCCATTCCTATGTGGACAGGTGAAGAGGTGTGGTGGTGCCTCTGAACTTTCTAGGAGACTGATTTATTATTCATATTTATTAGCTGGTTAGTTTCAAGCATTAAAAATAGTAAGCTGGTGTTGTCTGTTCAAGAGTATTTTAATAAGACTCTCAGAATTCAAAAGGGTTCTTCAATTCAATCACAAACATGTCCTTTTGTTAGTAGCTTAACTTTGCTTTTGTGGCAATTGTCCATATCATGTTAATTCCGGTGCGTGCTAACAAGTGATGATGATGATGATTATTATTTTACTGAATATTGATTCTGGTTTTGGAACAAGACCCGTGTTGCATGGTCCACAAGACCTTTGATTGCGACGGATTTGTTGGGGTGCATTCATGAAAATTTCCCATTTCACAATTTCACACTCCCTCAACAACAGTTAGATCCAGTTGTTTTGTCTAATATAAGTGTTTATGTTATGGCTGGCTTTTTCTACCATACTTTGAATGTAGAAGAAAGGTGGTTTATGGTGTGTGAAGGAATGTCTTGTTGTTGGCTTTACAGTTGTGTTGACAACTACATTTCCCACACAGTTGTCAAGCATATAAGCATTGTTGGGTGTGTGGTGTCTCACATGGTGTTGTGTGAATTTGCATT | |||||||||
gi|171515655|gb|FE683120.1|FE683120 Pv006C_M13R_E07.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA seque TCATCATCATCATCATCTTAT EST sequence (targeted fragment marked with yellow): CCCAAGGTGGTCCTCACGAAACGGGGATGGCATCTTTCCCATACTACCCGATGAGTATATGCTTACAACCTGGTCAGGTTCCTCAACCCCATTCATGGCCATCATTTGGAAGCTCAAGTTCATCAGAAGCAAAATTAAGTAAAGTTGACAGGAGAGAAGCAGCACTAATGAAGTTCAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTTAACCGGAAACGACTTGCTGAAAGGCGGCCTCGAGTGAGGGGACAATTTGTCAGAAAATTAAACGGCGCCAATATGGATCTCAATGGACAGCCTGCATCAATAGACTATGATGAAGATGATGATGAAGAGGATGAAGATGACCAGGGAGCAAGAGATTCTTCTCCTGAGGATGCTTGAGCATGTAATTGCTACTTTTACTTGACAAAATGAAGGGCCAATCCATTCTTTCTGCACTGATATTGTCCTATCAAAAGGATTCCTTACTTTTTTTGGAAAGTTCTGACCAAAGCATCAAATTATTAGCATGTGCACCTGCTCTCATGTATCTGGGGTGCTGATCCAATATGTACCTCATCTTTTACAGTTGAAACAAGCTCTTGCGTGGTCATTTTCCATTAGCAGCTCACTAAATGATCCTTCTGAGCTATTTCTGAAGGTATTACCTCCTGCTGGTTATGTCCACTGCGGCTGAGAGTATCATGCTTACTTTTTATTGAAACAGTTGCAAGCAGTTTGTTCCTGCTTATTTTATGGTGAAATGTCATGACATTTT | |||||||||
gi|171538975|gb|FE710808.1|FE710808 Pv026B_M13F_F04.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA seque TCATCATCATCATCATCTTAT EST sequence (targeted fragment marked with yellow): CAAACACACCCCAAACCAAGTAACCAACTCGCTGCCATCTCCCACGTTTGGATTCGATCCCCAAAAAATGCACGAAAATAGAGATCCTGCAATTAGGCTCTTCGGCCAGAAGATCCCCTTCCCTGAAGATGTTGACATAGAAGAAGAAGAAGAAGATGATGATGATGATGAGGGTTGTGATGGAAGAGACCAAGAGATAGAAGAGGATAAGGATGCTGGAGTTGACAATGTTACCGAGGAAGAGCTAGAAGCTGATTCTGCTCCAAGTGCAGGAGAGACTAAAGATTCAGGTACCCCTGAGGCTATTGTGAACCCCGAAACACCCTCCATAGAAGAAGAAACTGCAAAATCAAAAGCTGACAAATCAGAGAAGGAGCAAGGCGATGCAGCCAACTCACAAGAGAAAACTCTGAAGAAACCAGATAAAGTGCTACCATGCCCCCGCTGCAAAAGTATGGACACTAAGTTTTGTTACTACAACTACAATGTCAACCAGCCACGTTATTTCTGCAAAGCTTGTCAAAGATACTGGACTGCAGGTGGCACCATGAGGAATGTTCCTGTGGGGGCAGGGCGGCGAAAGAACAAGAACTCTACCTCGCATTATCGCCACATCAGTATCTCTGAGGCCCTTCAAGCAGCCAGAATTGATTCTCATAATGGAACTCATCTTCCAACTTTGAAAGGCAATGGTAGAGTTCTCAGCTTTGGATTAGATGCANATGCACCAATTTGTGATTCCATGGCATCCGTCCTCAATCTTGGAGAGAAAAAGGTTCCTAATGGCACAAAAAATGGGTTTCCTCATGGCTTTGAGGATCAAGGACTCCCTATTCCTCGCAAAAGTGGGGAAAATGGTGATGACTCCTCGACTACATCTTCCATTACAGTTTCAAATTCCATGGGAGAAAGTAGCAAAAACACCTTC | |||||||||
gi|171537847|gb|FE687479.1|FE687479 Pv042D_M13R_C03.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA seque TCATCATCATCATCATCTTAT EST sequence (targeted fragment marked with yellow): GTAGCAGTAATAACAACAGCAATGGAAGTGATCACTGTGGCAAGAACACTTCTGCTCTCAACTTCATGAAAGATGGGTGGGACAATAGTCCTCCCCTAGGCTCATCCCCTAACGGGGTGTTGCAAAAAACAGCATTTGGATCACTTTCCAATAGCAGTGCTGGAAGCAGTCCAAGGGCAGACAACAACAATAACAAAGAAAGTGCCAGTGCCACCACACTGTGCAATGCCTTGTGAAGTCCATTCCATACCAGAACAACAACTTTTATGACGGCATGATGGAAAGAAGAAGAAGGAGAAGGAGAAGAAAAGAACTTTGTTCTTTTGACTTTAATGATTAGTGAAGTTTATATATATTATAATATATAAATACATATGGTAATCTTAGAATTTGGAAATATGTGTTCTTGTTTATTAATACCTTGCCCTCATCATAATTTGGATATGTAGGTAGGTTTTTGGTTTGCTTGACTTTAATTTGTTTCTTCTTTTCATGCATTTTGGCAAAGTTTGTATTCTACTGTAAGTGATGTTGGTTGGAGTGTGTGGACTTGGTTGTTTTTTAAGGAGATGATGATGATGA | |||||||||
gi|171511712|gb|FE685811.1|FE685811 Pv056D_M13R_F02.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA seque TCATCATCATCATCATCTTAT EST sequence (targeted fragment marked with yellow): GTCACTGTGTCCGAGAAAGAATCATCTCGTCATCATCATCATCATCATCAACTCAATAGCCTCACGAGGAATTCCGACGGGGAGATTCTCCGGTCATCGGTCGGCGAGACAAGGAAATCGGCGTCGCCGGAGAAGGAGGACCGATACTACATAACGAGGGGTTCGGCGGAGGAGAGCAGCAAAGTGGCCGGTGATGGTAACAACGGCGAGGAACGAGCCCTAGTGTGGCCAAAGCTTTACATCATTCTTTCAAGCAAGGAGAAAGAGGAAGATTTTCTGTCCATGAAGGGTTGCAAGCTTCGTCAGTGACCCAAAAAGAGGGCAAAACTCATCCAAAGAAGCTTACCTTTGTTGAGTCTTGGGGCGTGGTTGACTGATATATGCCAAGAGAGATATGAAGTTAGGGAGAAGAATAGTAACAAGAAGAGACCAAGAGGGTTGAAGGCCATGGGAACCATGGAGAGTGATTTTGAATGATGGTGGAATAACTAGAGGGGGAAGAAAAAGAAAGCCCTTTTCAGCATTAAATGTTTTGGAGATAGTGTTTCCATTGAAGAAGATGACGAAGATGATGATGATGATGAAGATGATTCAATGGAAACACAATATC | |||||||||
gi|312059679|gb|GW898845.1|GW898845 PVUSE2NG-RP-027_A10_22JUNE2009_047 PVUSE2NG Phaseolus vulgaris cDNA, mRNA sequence TCATCATCATCATCATCTTAT EST sequence (targeted fragment marked with yellow): GAGCAATGACTGGCCCGCAACTCATGACTTCCACAACTTTCATGAGGGTGATGATGATGATGATAATGGTGTCATCGATGTGGCTCCAGCTGCATATAATTTGGCAACATATTATATATATCAGTAGATGAGTAGGAGGCACTGAGGAATAATATAGATATAGTAGTAGCCAGTGTAAGCTTCTTTAGTCTTGCTTAGTTTTATTTGTTTTTGCTGAAAATTTGTGTTGAAATTACTTGGTAGGGTTTATGCTTTCAGTCAAT | |||||||||
gi|62713063|gb|CV539659.1|CV539659 POD_021_H02 Phaseolus vulgaris pod EST library Phaseolus vulgaris cDNA 5', mRNA sequence TCATCATCATCATCATCTTAT EST sequence (targeted fragment marked with yellow): GGTACTGTCTTAGCTTTGATTCTCTGTTCTCTGTTTTGTTCTGTTTCGCGTGAACTTAAACAATGAAGAATGCCAAGGGCAAGGGAGCAGCAAAGGTCTCAAAAGAAGCACTGAAGCCTGTTGATGACAGAAAGATTGGAAAGAGGAAGGCTCCTAGTAAGCCTGACAAGGGCAGTGCACCAAAGGCAAAGAAGGAGAAGGCCAAGAAAGACCCCAACAAGCCTAAAAGACCACCCAGTGCTTTCTTCGTGTTCCTTGAGGAATTCAGGAAGACCTTTAAGGCTGAGAATCCTAATGTGAAGGCTGTGTCTGCTGTTGGGAAAGCTGGAGGAGAGAAATGGAAATCCCTATCCAGTGCTGAAAAAGCTCCATATGAAGCCAAGGCAGCAAAAAGGAAAGTCGAGTATGAAAAACTTATGAAAGCTTATGATAAAAAGCAGGCAAGCTCCGCAGATGATGATGAATCAGACAAGTCCAAATCTGAAGTGAATGATGAAGATGATGAAGCCAGTGCAGAGGACCATCAAGAGGAGGATGAGGAAGAGGATGATGATGATGANGAAGATGAGGATGATGACTGAGATGAATGTT | |||||||||
gi|171560372|gb|FE693542.1|FE693542 Pv016B_M13R_G01.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA seque TCATCATCATCATCATCTTAT EST sequence (targeted fragment marked with yellow): ATCATTGAGCTAGACTTTGAAAGAGCGAATAATTATTTATCAGATCTTCTTCCCGTGTTAATCTCCTTCTGATTGATCACCATGAAGAACAAACAGCTCCTTATTTTAGTCATTCTTTGCTTACCCACTCTCCTCTTGGGAAGGCCTTTCGAAGGCCTTGCTCGAGGGGCCGCTGTAGAATCTGCGCGAGTTGCCACGGAAGAAGGTACCTCTGCGAAAGGTATTGCTACCGCCTCGGTATTATCAGATCCCAAATCAACAAAGGCATCCCTCTCAGTACTTCGTGATCATGATCATGATCCCAACCTCAACTCACAATCTGCACCAGCTGTCATCTACTCGCATGATGCATCCAAATTTAAACAACCCTCCGAATTCAAGCCTGCTCAAGATGGCGGGGAATCATCCAAGCCAAAAGGATTCAAAAGCAATTTTATCAGTAAAGTCAAACAATCCTCTGGTCTTGTTGAGTAGCGGTTTTCTTTTTCTCTCTTTGGGGTTTTATGTGTTAGTTTTGTTCGTTCGTGGTTGATGTGTTTGTTGATTCGATATCTGGGAGGGTTGGGTGTTGATGATGATGATGATGATGGTGATGGTATTCATGATTATGATGATTATTTTGTGATTC | |||||||||
gi|171671522|gb|FE702412.1|FE702412 Pv031D_M13R_F05.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA seque TCATCATCATCATCATCTTAT EST sequence (targeted fragment marked with yellow): CCGCACCGATTTTAAGACGGTGGGGCGAGAGGAGATTGCTCGGGCTAACCCCGTGATCAAAGCAGAGAAGCTGCGGAGGATATGATTCGATCTCATCCGTCCGATGGGACCGGAGTTTGATGATTTGATAACAAGCGTCCACGTGTACTGCGAGGGAGGGAGAGAGAGATGTCGTTATGTATGATGTTATGAATATGATGATGATGATGATGATGATCTGTCTTCAATGTTAAGATAAAACTTAAATAGTCGGTTTGTCTCGTATAGAAGGGATTGAAATGAATAAGTCATATTTTT | |||||||||
gi|312044091|gb|GW904727.1|GW904727 PVUSE3NG-RP-014_P09_2APR2009_033 PVUSE3NG Phaseolus vulgaris cDNA, mRNA sequence TCATCATCATCATCATCTTAT |