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mature miRNA: TGAAGCTGCCAGCATGATCTA
species: Phaseolus vulgaris
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|312038122|gb|GW903443.1|GW903443 PVUSE3NG-RP-010R_A11_31MAR2009_048 PVUSE3NG Phaseolus vulgaris cDNA, mRNA sequence 

TGAAGCTGCCAGCATGATCTA
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ACTTCGACGGTTGTAATAG-T

EST sequence (targeted fragment marked with yellow):
ATACTTGGTGTTGTTTGTACATGATGAAAATGCCGGAAAATCATTTGTGCATGTCATTGATGCAAAAACAATGTCAGCAGATCCTGTTGCGGTTGTGGAATTGCCCAATAGAGTTCCATATGGTTTCCATGCCTTCTTTGTGACTGAGGAACAATTGCAAGAACAAGCAAAACTGTGATAATGTTGGCAGCTTCACTGTGTTGTTCTGCCTCAAACTTTGTATACATCTTTCTACAAATAATGGAATGTACTTCATATTATCGAGTATCACAGTAAACCAATGTTTA