| mature miRNA: TGCACTGCCTCTTCCCTGGCT species: Phaseolus vulgaris database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|62714977|gb|CV541573.1|CV541573 RTS_107_B05 Phaseolus vulgaris P- root EST library Phaseolus vulgaris cDNA 5', mRNA sequence TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): GCCAGGCCAGGGCACTGTGCTGGAGGCATGAAGCTGCAGATCAATGTGGAGGCTGCCAGCTCCACCACCCCAACCACCCCTTCCACCACCCCTTCCACCACCCCTTCCACCCCTTCCACCAACACCACCTCACCATCAGCAAAGCCCAGTGGAGCAGTTGGAGTTTCCAGTGGCATTTCCCTTCTGGTGGCTGCTTCAGCAGTTGTTCTTGGTTTCATGGGCTAGGGAAGAGACAGTGCTGCTTTCACCTTTATTCATCAACATGTTCTTCTTTTCTTTGAGTTCCTGTGAGCTTCTTTTGATTCACACATGTTTATTTCATCTTCATGTCTATCACCCTTTGATCTTTGAAAATGACACATTTTCTTCAACATTTTGTTTAACATTTTCATTTATTACAAGGCTATGTAATCTTATAATAAAATAATTTTATTCTGCCATC | |||||||||
gi|62705677|gb|CV532273.1|CV532273 LVS_022_H12 Phaseolus vulgaris leaf EST library Phaseolus vulgaris cDNA 5', mRNA sequence TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): CTTTTATTATCTTTCTTCATTGCTTCTTTAATTGTGTTGTGTGCCTTGAACCAGAAAAAGAAATGGGTCTGGGAAGAGGCAGTGCAGTGGTGCTACTAATCTCACTCTGTTTCTTGCTGCTTCACTCTCAGATGGCTCATGCTGCAACCTACACAGTTGGAGGTTCTGGGGGTTGGACCTTCAACACTGTTGGGTGGCCCAATGGAAAACGCTTTAGAGCTGGCGACACACTTGTGTTCAAATATAGCAGTGGGGCTCATAATGTGGTGGCAGTAAACAAGGTTGGGTATGGTAGTTGCAAGACTCCAAGAGGGGCGAGAGTGTATCAGTCAGGGAACGATCAGATCAAACTTGTTAAGGGACAGAACTACTTCATCTGCAACTATGTGGGTCACTGCGAGTCTGGAATGAAAATTGCCATCAATGCTGCTTGAGTTTGAGTGTGTTCAATGTGGTTAACTATATATTAACTATATATCTCAGTGCTTTCCTACTGATATAATTGTATTGTAATGCAAATTGCACTTGTTTAGTGGGAACTTATCTCAGTTTAATGAGTGGATAAGATAGGTATGTGTGGGAAGAAATAGGGTAGCTATATCTGCTCTCTTTTGTATCTTGCTTATTATCAATGATTAAGAATAATAAATGATGTCGG | |||||||||
gi|312047052|gb|GW905268.1|GW905268 PVUSE3NG-RP-017_A10_22MAY2009_047 PVUSE3NG Phaseolus vulgaris cDNA, mRNA sequence TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): CCGCGCCTTCTACTCCGCCCCCATCCAAATCTGTATTCCAGGGTTGAAATTTCACACGTTGAAATTTGGTACCAACTCCAACCCTACTCCACCATGGCCTCCTCCATCCACAAATTTTGGTTTTTCTCCCTCGCCCTTCTCCTCCTTGCATCCCCTCTTCTCCAAGTCGCTAGGTGTCAATCAGACTCGGATGATGTTGTGGAGACCACTGAAGAATCAAGTGATATTGGCATTGTTGGTGATGATGCCCAAGACTTCGGTGATGGGGCCTTCTCTTCCGCTCCAGGAATTGATACAATAAGTGTATTTCCAAAAAATAGCGCACGATTGATAACAGCTGGGGAAGAGGCAGAGCTGCTTGTTGGTGTTAAAAATGATGGGGATTCAAGCTTGAATGTCATTGCAATCAAGGCCAGTATTCACCTTCCTTTTGATCACCGTCTGCTGGTTCAAAATCTTACTGCATAGGGTTTCAATAATGGTTCTGTACCAGCCTCATCACAGGCTACTTTCCCATATCTATTTGCAGTCAGTAAGTTCTTGCAGCCTGGAAATTTTGATCTTGTGGGGCACTATTATTTATGAGATAGATGATCATCCATTCCAAA | |||||||||
gi|312056677|gb|GW884736.1|GW884736 PVUSE1NG-RP-008_I19_30MAR2009_072 PVUSE1NG Phaseolus vulgaris cDNA, mRNA sequence TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): GACTCAACCCAACAAACTTTTATTATCTTTCTTCATTGCTTCTTTAATTGTGTTGTGTGAGTTGAACCAGAAAAAGAAATGGGTCTGGGAAGAGGCAGTGCAGTGGTGCTACTAATCTCACTCTGTTTCTTGCTGCTTCACTCTCAGATGGCTCATGCTGCAACCTACACAGTTGGAGGTTCTGGGGGTTGGACCTTCAACACTGTTGGGTGGCCCAATGGAAAACGCTTTAGAGCTGGCGACACACTTGTGTTCAAATATAGCAGTGGGGCTCATAATGTGGTGGCAGTAAACAAGGTTGGGTATGGTAGTTGCAAGACTCCAAGAGGGGCGAGAGTGTATCAGTCAGGGAACGATCAGATCAAACTTGTTAAGGGACAGAACTACTTCATCTGCAACTATGTGGGTCACTGCGAGTCTGGAATGAAAATTGCCATCAATGCTGCTTGAGTTTGAGTGTGTTCAATGTGGTTAACTATATATTAACTATATATCTCAGTGCTTTCCTACTGATATAATTGTATTGTAATGCAAATTGCACTTGTTTAGTGGGAACTTATCTCAGTTTAATGAGTGGATAAGATAGGTATGTGTGGGAAGAAATAGGGTAGCTATATCTGCTCTCTTTTGTATCTTGCTTATTATCAATGATTAAGAATAATAAAT | |||||||||
gi|312032712|gb|GW884996.1|GW884996 PVUSE1NG-RP-009_J02_30MAR2009_007 PVUSE1NG Phaseolus vulgaris cDNA, mRNA sequence TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): GACTCAACCCAACAAACTTTTATTATCTTTCTTCATTGCTTCTTTAATTGTGTTGTGTGAGTTGAACCAGAAAAAGAAATGGGTCTGGGAAGAGGCAGTGCGGTGGTGCTACTAATCTCACTCTGTTTCTTGCTGCTTCACTCTCAGATGGCTCATGCTGCAACCTACACAGTTGGAGGTTCTGGGGGTTGGACCTTCAACACTGTTGGGTGGCCCAATGGAAAACGCTTTAGAGCTGGCGACACACTTGTGTTCAAATATAGCAGTGGGGCTCATAATGTGGTGGCAGTAAACAAGGTTGGGTATGGTAGTTGCAAGACTCCAAGAGGGGCGAGAGTGTATCAGTCAGGGAACGATCAGATCAAACTTGTTAAGGGACAGAACTACTTCATCTGCAACTATGTGGGTCACTGCGAGTCTGGAATGAAAATTGCCATCAATGCTGCTTGAGTTTGAGTGTGTTCAATGTGGTTAACTATATATTAACTATATATCTCAGTGCTTTCCTACTGATATAATTGTATTGTAATGCAAATTGCACTTGTTTAGTGGGAACTTATCTCAGTTTAATGAGTGGATAAGATAGGTATGTGTGGGAAGAAATAGGGTAGCTATATCTGCTCTCTTTTGTATCTTGCTTATTATCAATGATTAAGAATAATAAATGATGTCGG | |||||||||
gi|170746141|gb|FE897540.1|FE897540 PvEST3391 Bean pod tissue cDNA Entry Library Phaseolus vulgaris cDNA clone BE5d-571 5' simil TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): ACAGAGGGACTAAAGGGTTGTGCTGCCATGTCGGACGACGAAAGGGAGGAGAAGGAGTTGGATCTTTCTTCTGCCGAAGTGGTAACCAAATACAAGACTGCTGCTGAGATTGTTAACAAGGCCTTGAAGCTTGTTATTTCTGAATGTAAACCTAAGGCTAAGGTTGTGGACATTTGTGAGAAAGGGGATTCATATATTAGAGAACAAACTGGAAATGTTTACAAGAATGTGAAGAGGAAGATTGAGAGAGGCATTGCTTTTCCTACATGTTTATCAGTAAACAACGTGATTTGCCATTTCTCTCCACTAGCCAGTGATGAGGCAGTGTTGGAAGAACGTGATATATTGAAAATTGATATGGCTTGTCATATAGATGGTTTCATTGCTGCTGTGGCTCACACCCATGTACTTCAGGAAGGTCCTATCACAGGTAGGGCAGCAGATGTCATTGCTGCTGCAAATACTGCTGCAGAGGTGGCCTTGAGGCTTGTCAGACCAGGAAAGAAGAACAAGGATGTTTCTGAAGCAATTCAAAAAGTTGCTGCTGCCTATGACTGTAAAATTGTTGAGGGTGTTCTTAGTCACCAAATGAAGCAGTTTGTTATTGATGGGAATAAAGTTGTGCTTAGTTTGTCTAACCCGGAGACTAGGGTTGACGAANCAAATTTGAGGAGAATGAAGTTTATGCTATAGATATAGTAACCAAC | |||||||||
gi|312056615|gb|GW884623.1|GW884623 PVUSE1NG-RP-008_B20_30MAR2009_080 PVUSE1NG Phaseolus vulgaris cDNA, mRNA sequence TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): GGAACCAGAAAAAGAAATGGGTCTGGGAAGAGGCAGTGCAGTGGTGCTACTAATCTCACTCTGTTTCTTGCTGCTTCACTCTCAGATGGCTCATGCTGCAACCTACACAGTTGGAGGTTCTGGGGGTTGGACCTTCAACACTGTTGGGTGGCCCAATGGAAAACGCTTTAGAGCTGGCGACACACTTGTGTTCAAATATAGCAGTGGGGCTCATAATGTGGTGGCAGTAAACAAGGTTGGGTATGGTAGTTGCAAGACTCCAAGAGGGGCGAGAGTGTATCAGTCAGGGAGCGATCAGATCAAACTTGTTAAGGGACAGAACTACT | |||||||||
gi|62713941|gb|CV540537.1|CV540537 POD_033_D11 Phaseolus vulgaris pod EST library Phaseolus vulgaris cDNA 5', mRNA sequence TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): GTCTCACCAAATCATGGCATCCTCCACTGCTCTGGTTTTGGGCTCACTCATAGCAGTCACCATGGTCCTTCCAACCCTGGCAACCCTCCACACCGTGGGAGATTCTTCAGGTTGGGCAATTGGTGCTGATTATAGTTCATGGACTAGTGGCAAGACCTTCGCAGTGGGTGATACTCTCGTGTTCAACTATGGAGCTGGGCACACAGTGGATGAAGTTAAAGAGAGTGACTACAAATCATGCACAGCAGGGAATTCAATTAGTTCAGACAGTAGTGGTGCAAGCACAATTGCCCTCAAGACTGCAGGCACTCATTACTTCATATGCTCTGTTCCTGGACATTGTTCTGGTGGCATGAAACTTGCCGTCACTGTCAAAGCAGGAAAAGACACTACTCCTTCAACTGGGACGGCTTCACCTTCCGATGGCACAGCCACCACAGCCACACCAACAAGCACCACCACAACCACTGCTGCTAAATCAAACTCGGCTTCAACAAGTAGTGTGTCATCAATTGTTGCCATGTTGATTGTTTCATGGATCTCTTTCTGTGTCTTGCGCCTGGTGTAAGAAATTTGGTCGCTGAGCCAGGACAGAGGCAGTGCTTT | |||||||||
gi|187433971|gb|FG232344.1|FG232344 pvrebac010001a_F16_M1321_phred13_vc root hairs of Phaseolus vulgaris harvested 24 hours afte TGCACTGCCTCTTCCC-TGGCT EST sequence (targeted fragment marked with yellow): GAGTGTTATTCTTCTTTCTCAATCTTTGCAATTAAAAACATGGCCATGGGAAGAGGCAGTGTAATTGTAGTTCTGACACTGTCATTGTGGTTGGTGCTTCACTGTGAGATGGCTCACTCAGCCACCTACACAGTTGGAGATGCAAATGGTTGGACCTTTAACACTGTGGCTTGGACTAAAGGAAAACGGTTCGGAGCTGGTGATACACTTGTGTTCAACTACGGCCCTGGGACTCATAATGTGGTGGCTGTAAACAAGGCTGGCTACAAGGCATGCACGACCCCAAATGGTGCCAAAACCTATAATTCAGGAAGTGATCAGATCAAGCTTGTGAAGGGACAAAACTACTTCATCTGCAATTTCGTTGGTCACTGCGAGTCTGACACCAAAATTGCCATTAATGCTCTCTGAATTAATGGATTAAATTTATCTTTGGACAACAATGCAATATCTTATGTGAAATGCTAC | |||||||||
gi|62712606|gb|CV539202.1|CV539202 POD_015_F04 Phaseolus vulgaris pod EST library Phaseolus vulgaris cDNA 5', mRNA sequence TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): TCTCACCAAATCATGGCATCCTCCACTGCTCTGGTTTTGGGCTCACTCATAGCAGTCACCATGGTCCTTCCAACCCTGGCAACCCTCCACACCGTGGGAGATTCTTCAGGTTGGGCAATTGGTGCTGATTATAGTTCATGGACTAGTGGCAAGACCTTCGCAGTGGGTGATACTCTCGTGTTCAACTATGGAGCTGGGCACACAGTGGATGAAGTTAAAGAGAGTGACTACAAATCATGCACAGCAGGGAATTCAATTAGTTCAGACAGTAGTGGTGCAAGCACAATTGCCCTCAAGACTGCAGGCACTCATTACTTCATATGCTCTGTTCCTGGACATTGTTCTGGTGGCATGAAACTTGCCGTCACTGTCAAAGCAGGAAAAGACACTACTCCTTCAACTGGGACGGCTTCACCTTCCGATGGCACAGCCACCACAGCCACACCAACAAGCACCACCACAACCACTGCTGCTAAATCAAACTCGGCTTCAACAAGTAGTGTGTCATCAATTGTTGCCATGTTGATTGTTTCATGGATCTCTTTCTGTGTCTTGCGCCTGGTGTAAGAAATTTGGTCGCTGAGCCAGGACAGAGGCAGTGCTTTCAGCGTTTCTTCCATCTTATTTTATTACTATAATTATTGTCACTCTGTTTTCTGGTTTTACTTATTCAGATTTATCT | |||||||||