miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGCCAAAGGAGAGTTGCCCTG
species: Phaseolus vulgaris
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|116834368|gb|EG594372.1|EG594372 SSH-77 Common bean supression subtractive hybridization library Phaseolus vulgaris cDNA, mRN

TGCCAAAGGAGAGTTGCCCTG
|||||||||||||||||||||
ACGGTTTCCTCTCAACGGGAC

EST sequence (targeted fragment marked with yellow):
GATGAAGTCATTTGTTTGATCCCTTGCATACTACTTCAGTGCTTCTCTTCAATGGAGTGAATGATCATATGCACTGAATAGCATAGAAGATTACATATTAAGCTAAAGCAGCAACAGGGCAACTCTCCTTTGGCAAGATATTTCATGAAGTGGTCATGTCATTTCCTGCCAACAAAGAGAAGCCCTATAACTGGTTTGCTTATTGACTATAATATCTTGTGCA