| mature miRNA: AATTTGAAGCATGATGTCAAG species: Physcomitrella patens database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|208391808|gb|DC942342.1|DC942342 DC942342 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. paten AATTTGAAGCATGATGTCAAG EST sequence (targeted fragment marked with yellow): GTGTGTCGATGCGTCGAGGAGCTTCGACGTTGATCGTAACCCTAATTTCTCGCAACCATTGTTTCGTCACAGCTAAACATCGTCTTGCCTCGTCGTCCTTCTCGTCCTCCTCCTCTGTGCCCTTCCTCATTCATGTCAAAGGCTGTTGACACTGTGCTTCAGATTGATTCAATTGCGCTTGTCTGTCCGCCATGGCGGATCCCGAAGCGGTGCGCGTTGAATACAGGCGCAAGCTTCTGCAGCACAAGGAGATTGATTCGAGGCTAAGGAGTTTGCGAGATAATGTCAAGGCTGCAAGGAGGGAGTTCGATAAGACGGAGGATGACCTGAAGGCTCTGCAGAGCGTGGGTCAAATCATCGGGGAAGTGTTGAGACAGCTTGATTCTGAACGATTGATTGTTAAGGCCAGCAGTGGTCCACGATATGTGGTCGGATGCCGCAACAAGGTCGACAAAGAAAAGTTGGTGGCTGGTACTCGAGTGGCACTAGATATGACCACTCTCACGATCATGCGAGCACTTCCCAGAGAGGTTGATCCCGTAGTGTACAACATGCTTCACGAGGACCCTGGTAATATTAGCTACTCAGCTGTTGGAGGACTAAGTGACCAAATTCGAGAACTTCGTGAGTCAATTGAGTTGCCGCTTATGAACCCTGAGCTCTTCCTTCGAGTTGGCATTAAGCCTCCAAAGGGTGTATTGTTGTATGGCCCCCCTGGAACTGGCAAANCCTTCTGGCGCGAGCAATNGCTAGNATATNGATGCTAATTCTNA | |||||||||
gi|208394323|gb|DC904143.1|DC904143 DC904143 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp AATTTGAAGCATGATGTCAAG EST sequence (targeted fragment marked with yellow): GCAATTTNCTCCCCAGCCACCCCCGACCTGCCTTAGCTTGAACCTGCTACGCCNAGATTTTGTTGCAATTTTCANAACTTNCGTTGCTGGTTGCAGGGAAGCGCGTTGCGTGTGAGCTCCTTCAGCTCATCTGCTGCAAACATGGCCGCAGTTAGGGGCACGAGGAAGGCTTTANNAGCTCTGGTGGTCATGTTTGTGATGTGCANCGCTGCAGCTAGCGCCCAAACCGATTGCAGCACGCAGTTTCAATGACTTGGCTTCGTGTTTCAGATTTCGTGAACAGCAACATTACCACTGCGCCTTCAGCGCCGTGCTGCTCNGCTTTCAAAACAACTCAGGCTCAGTTTCCCGTTTGCCTTTGCCAGCTGCAANAAGCATTCAATGATCCCNCCACCGNCACCGGGAACGTCACGCGAGCAAACCGGATTCCTGCTCTGTGTGCTGTTGCAATGNACCCTAGCAGGTGACCCGGTCTCCTCGGGCTAACTCCCNTANTGNCTCCTGTGGTAGNCCCTGTGGTGGCTCCNGTGGTAGCGCNGGTCNCTGCAACTCCNACAGCNACTCNAACAATTGCACCNAGAACTCATGCTCCNNCTTCAACTCCAGTGACAGCCNCNGNGNCAACAGGACCAACAGGCATGAACGNCGACTGTTCGAATGANTNCAACGAGNTTGCATCNTGCTTCGCGTANGTCACGTCTAATGACACTAAACNAAGTACNGANTGNTGCTCGTNTCT | |||||||||