miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTCCACAGCTTTCTTGAACTA
species: Picea abies
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|280981146|gb|GT886932.1|GT886932 65-2-36-D05.r.1 Non-normalized library of 1 month old bare root Picea abies cDNA, mRNA seque

TTCCACAGCTTTCTTGAACTA
.||| ||||||| |||||| |
GAGGAGTCGAAAAAACTTGTT

EST sequence (targeted fragment marked with yellow):
CTGTATAAGACTCCTAAGGCGACTCGAGCGCTCGAAAGTCGGTGTTGGAATTTGTCGCTTGATTTTAGGGTTCTCCACAAACCTGATGTTCCAGCCTTTTAATCTTGTTGTAGGCCTTCGGATTTGGTGGAAAAGTTTTCCTTTCCCTGTGTATGATTTGTATGCTAATCGAGAGAGATCTTGCCTGTTGTTGTAATCTCAGATTGGAATGACATGGCCCGAGAGAAAATAGAGATTAAGAGAATAGCTAACGCTTCGGCGAGGCAGAGGACGTTCTCGAAGAGGCGGAGGGGGTTGTTCAAAAAAGCTGAGGAGCTATCGATTCTATGTGCAGCAGATGTAGCCCTCCTCGTTTTTTCTTCCACTGGGAAGCTGTACAACTACTCGAGCTCCAGTTTTAAAGTATGGAGGTGATATTGGACAAGTACGTTTTGTATCCGAGCACAATTCAAAAGGATGGACAAC