| mature miRNA: AGTTCAAGAAAGCCGTGGAAA species: Picea engelmannii x Picea glauca database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|68772798|gb|DR449684.1|DR449684 WS00950.BR_M05 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00950_M05 5, mRNA se AGTTCAAGAAAGCCGTGGAAA EST sequence (targeted fragment marked with yellow): GCAACCACTCATCTTCTTTGCCCGAAGAATCTGATCACAGAGACAGCATTCTGAGATTCAGTAAGAATATCTGTCGAAGGGTTTTAGTTTCTCATCAATTCAATCGCTCCAAGTAGTCGGGAATACATGGCATTGGCAGAGCCTCCGCTCTCAGTGCGAAGGGTGCAGGCCCTCTTTCATTATTTGGATGCTGCGAAAAGCAAGATCGAGCGTTTAACAGTGCGTATGCTAAATGGCATCCGCGCGTTTTCCAAATTAAACCCCGCGTTGGCGTCGATTGCAATCTATGCGCTTTGCACGGTTGCAGGATTTATCATGTGGATTGCCATGGGTTTCTTGGATTTGGCAGCGGGGACTCGTGTCTTGGACGCCGCCATACATGTGACGGAGGGTTTGAATGAGCATGTCCTCCCTGCATTGCAGCTTCTCAACGGACTGCTTGCATTGCTTGTGGGATTCTCCATGCTGATGCGCCGGCTTAATATTAATCTTCACATCAATATTAATGGCAACAGTTCTAGAATTAATCCATACAACATGAGTACTTGGTCTCGCCGTTCCAAGATGATCAAAGCTCTGCCCAAAGGCAAGTACGGGTGTTTGAGAAGATCAAATGATATAAACAGGAATGATTCATCTTCATGTGCTATCTGTTTGAGTTGATTGGGGAAAAGGAAAGGGAAATCGGCATTCTTCCCAACTGCAGACATTATTTTCATACTTCGTGCATTGATCGCTGGCTTCTTCTCTGTCCACCAACTCTTCATGCCCTTTGTGCAGGGAAACGTTATTGCCCTCGACTCCTGACAAGTAGAATAAATACCGTGTGATTACAAGTTTCAGGCGCCCACATACGCAACTCCTGAAAAA | |||||||||
gi|69393667|gb|DR476806.1|DR476806 WS00968.C21_I02 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00968_I02 3, mRNA s AGTTCAAGAAAGCCGTGGAAA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTCACATAAAACTTTAACAGCACATTCAATCAAAGCAGCCAATAATCGAAGATATTTAAAACTACAGATTACGTAAAGATACCTTGTCCGAGTGCCTGGAATAGGGTTATATTACGTATCTGGAAACTGAAGTACCAAGTCGGATCACAGCAGAAGCAATAAAATTGAATCCCTTTAATATTCTTCCCACGGCTTTCTTGAGCTTCGTATGCGGATCTGTTAGCGGTGCGATCTGTCGCCAACACTCCCGATCGGGAAGTTCAAGAAAGCCGTGGAAAAATATGAGAGCATTCTCCGGCTTAGCGTACTGATAAATAAATATTCTTCCCTAATTCTTGATCGCTCTAATGGCCCAAAGCTTCCCCAATTCTTCAACTGTACCCGAAAGGAATCGTCTCTCTTTCCTTATGCAGAAGGAGGGCCGTCCATCGAATATCTTTAACTTCTATGGTCCTTATACTCTCTCCTGCTGTGTTATCGCCATTATTATCACCACAGAAGACTCATAACAACGAAATTTTCGCAAGCAATTATTGCACAAGAACGCCCATTACAGATGATGAAATCCATGCAGTCATCCGATCCGACACCTTCTTCCCGGAAAACTGCACAAGAACCAGACGATGGCCATCAGGATTATGGTGAACTTGGACGGGGTTCTGAGCAGCTCACGAGATTGGTCGTGCTCAGCTGGACCCAACATTGGATGCAACCAGGTTAACTCATACGAAAAGTGAAAGTCCCGTCGCTATTAAACCTAATAATATTTAAAACCCATGTGCTCGAACTTGTGGTGTCCTCATAAGATATATTGGTAA | |||||||||
gi|69367655|gb|DR468873.1|DR468873 WS00946.B21_C21 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00946_C21 3, mRNA s AGTTCAAGAAAGCCGTGGAAA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGGGGGGGGAGCAGCTTATCATTATAACAAGAGGGGATAATAAAAAAAACTTGACCCTTAGTAGTACAATAAAATTTGGGGGGCAGCCCTCTCCAGCCCCAAGGGAGGTTATCCTTCCTAATCAAACTAAAAATGCCCTTTTTCCCCCAACAGGCTCAAATTGGGTATCAAATTAACAAAATAATGACCTAACTGTCTAGCCATCCTGACCAACACTTGTCTTTGGTTATAACTATACCAAGACATCATGGCAAGCAACATCACTGCACTTCACATCTGCCATGTACAACATTAGCACTAACCCTTACTAAATTAACATCTATAACTAACCCAAATGGATGCTCTCAATTGAGTGATCAGTTCCAGTAATCGCCCAATGCTTCTTGGGGAGCTGGGGGGCCCAATAAAATTTTCATGCCAACATTCTCTAATTGATGGGAAAAGTAAATAATTGAATGTAAAATTTTGAAAATGCCACGAGGAACCACAATCATGCCTGACATGTTGGAGTAGCTCATCGTCCATGGCAAATAAAAGCATGGAAATTTATTTCTTATGAGCATCTCTACTCGAAATTTTCTGAAAAAATGCGGTTTTTGCTGCTGAATCTGTGACAAATCGACCAAGCACTGTAATAGTTGCAGGGCTGCTGCCAATTTTTTCAATGCCCCTGGAAAGCATGCAAATGTGGCTAGCCTCAAGTACTACCATAACATCAACTGTGTTGCAAGCATAATGAATTGCTTCAGCTATCTGCTTTGTAAGCCTTTCTTGAACTT | |||||||||
gi|69390064|gb|DR475589.1|DR475589 WS00965.C21_B05 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00965_B05 3, mRNA s AGTTCAAGAAAGCCGTGGAAA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTAATAGAAGAGACTTGACCCTTAATAATGATTGAATAGTAGTACAATAGAATTTGTGTGGCAGCCCTCTCCAGCCCCAATGGAGGTTATCCTTCCTAATCAGACTAAAAATGCCCTTTTGCCCCCAACAGGCTCAAATTGGGTATCAAATTAACAAGATACTGACCTAACTGTCTAGCCATCCTAACCAACACTTGTCTTTGGTTATAACTATACCAAGACATCATGGCAAGCAACATCACTGCACTTCACATCTGCCATGTACAACATTAGCACTAACTCTTACTAAATTAACATCTATAACTAACCCAAATGGATGGCTCTCAATTGAGTGATCAGTTCCAGTAATCGCCCAATGCTTCTTGGTGAGCTGGTGGGCCCAATAAAATTTTCATGCCAACATTCTCTAATTGATGGGAGAAGTAAATAATTGAATGTAAAATTTTGAAAATGCCATGAGGAACCACGATCATGCCTCACATGTTGGAGTAGCTCATCGTCCATGGCAAATAGAAGCATGGAGATTTATTTCTTATGAGCATCTCTACTCGAAATTTTCTGAAAGAATGCGGCTTTTGCTGCTGAATCTGTGACAAATCGACCAAGCACTGTAATAGTTGCAGTGCTGCTGCCAATTTTTTTCAATGCCCCTGGAAAGCATGCAGATGTGGCTAGCCTCAAGTACGACCATAACATCAACTGTGTTGCAAGCATAATGAATTGCTTCAGCTATCTGCTTTGTAAGCCTTTCTTGAACTTGAAGCTTCTGACTAAAAAACTGAACTATAGAATTTATTTTTGACCTGTCAAGTTGTTCATTCCCTCTAACTGAAAAGTAGCCTATGT | |||||||||
gi|68775777|gb|DR451133.1|DR451133 WS00954.BR_M18 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00954_M18 5, mRNA se AGTTCAAGAAAGCCGTGGAAA EST sequence (targeted fragment marked with yellow): GCATCATCTTTGTCCGATCCGTATGTTAATTTCTCTGAAGATCCGATCACAAAGATAGTATTCTGTGATCCAGGACAAATATCTGTAAAAGGGTTTTGGTTTTTCATCTATTCAATTGCTCCAAGTAGTCGTGAATTGCTTGCATCGTGTAGAGGAATTAGAATATCTAGACTACAGTTCATATATAATACATGGCATTAGCAGAGCCTCCACAGTCTCCACTTTCAGCGAGAAAGGTGCAGACCCTCTTCCATTTTTTGGATTCTGCGAAAGGCAAGTTCGAGCGTTTAACAGTGCGGATGCTTAATGGCGTCCGCGCGTTTTCCAAATTAAACCCCGCTTTGGCGTTGATTGCAATCTATGCGCTTTGCACGGGTGCAGGATTTATCTTGTGGATTGCCATGGGTTTCTTGGATTTGGCAGTGGGAACTTCTGTCTTGGAGGCCGCCATACATGTGATGGAGGGTTTGAATGAGCATGTCCTCCCTGCATTGCAGCTTCTCAACGGTGTGCTTGCCCTGCTTGTGGGATCCTTCATACTGCTGGGCAGGATTCATATTAATATCAATGTTAATAGCAACCGCTCCAGACCTAATCCAAACAAGATGAGCACTCTGTCATGCCGCTCCAAGATGATCGGAGCGCTGCCCAAAGGCAAGTACGGGTGTTTGAGAAGATCAGATGATGCAAATAAGAATGATTCATCTTCATCATCATGTGCAATCTGTT | |||||||||
gi|69380784|gb|DR473062.1|DR473062 WS00957.B21_P04 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00957_P04 3, mRNA s AGTTCAAGAAAGCCGTGGAAA EST sequence (targeted fragment marked with yellow): TTTTTTGACAAATAATCTCACAGCTTTTCAAATGAAGGAAATGTCCTTCTGGGCGAAATTAGCAGTACATCTTGACTTTCTACATCTGTGCTACAGAAAGAAAGATTTGAAGCATTTAAAGAAGAGCGGATAGCTAAAAGTTAAATTAATTCAAGCTTATGACAAGCAAATTAACAGGTACATGGATTGAAAGATGGAAATTTGTGTATCATAATGACAGGAGAGGTAAGGAGAGAGGAAATCAAAAGTTATCGGTACAGGTTTATTTTAATCTGAGAAGCTACCTGCATAAATCTATCCATTATCTTAATCCTGGATCTTGGATCTAATGAGCATCCAGATCTAATAAACATCCAGACTCCAGAGTAATCAAAAGAAATATAAACCTAATTCTTTTGTACTTTAAAGATCCAAGGACGTAACATATTTACTAGCTATTCCCGGAGCAATAAACATTGACATGGACATTTATGTTCATGAATTCAAGGATTAGCTGAGATGGGCCTTTACTGCACCCCCAGGCCAGATCAAAGATCGAGGAGATCATCTCTCACATAAAACTTTAACAGCACATTCAATCAGAGCAGCAAATAATCGAAGATATTTAAAACTAAAGATTACGTACAGATACCTCATCCGAGTGCCTGGTATAGGGTTATATTATGGATCTGCAAACTGAAGTACCAAGTCGGATCACAGCAGAAGCAATAAAATTGAATCCCTTTAATAATTTCCCACGGCTTTCTTGAGCTTCTTATGCGGATCTGTTGGCGGTGAGATTGACCGCCAACACTGCCGATCGGGAAGTTCAAGAAAGCCGTGGAAAAATATGACAGTATTCTCCGGTTTAGCGTGCTGTTAGATAAAAATCTTCCCCAATTCTTCAACTGCGCCCGATAAGACGACATTCGGCGGGACCGAGGACTCGTCTCTCTTTTCTTATGC | |||||||||
gi|68776332|gb|DR451410.1|DR451410 WS00955.BR_I24 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00955_I24 5, mRNA se AGTTCAAGAAAGCCGTGGAAA EST sequence (targeted fragment marked with yellow): GCATCTTTGTCCGATCCGTATGTTAAATTCTCTGAAGATCCGATCACAAAGATAGTATTCTGTGATGCAGGACAAATATCTGTAAAAGGGTTTTGGTTTTTCATCGATTCAATTGCTTCAAGTAGTGGTGAATTGCTTGCATCGTGTAAAGGAAGTAGAATATCTAGACTACAGTTCATATATAATACATGGCATTAGCAGAGCCTCCACAGTCTCCACTTTCAGCGAGAAAGGTGCAGACCCTCTTCCATTTTTTGGATTCTGCGAAAGGCAAGTTCGAGCGTTTAACAGTGCGAATGCTTAATGGCGTCCGCGCGTTTTCCAAATTAAACCCCGCTTTGGCGTTGATTGCAATCTATGCGCTTTGCACAGGCGCAGGATTTATCTTGTGGATTGCCATGGGTTTCTTGGATTTGGCAGCGGGAACTTATGTCTTGGAGGCCGCCATACATGTGATGGAGGGTTTGAATGAGCATGTCCTCCCTGCATTGCAGCTTCTCAACGGTGTGCTTGCCCTGCTTGTGGGATCCTTCATACTGCTGGGCAGGATTCATATTAATATCAATGTTAATAGCAACCGCTCCAGACCTAATCCAAACAAGATGAGCACTCTGTCATGCCGCTCCAAGATGATCGGAGCGCTGCCCAAAGGCAAGTACGGGTGTTTGAGAAGATCAGATGATGCAAATAAGAATGATTCATCTTCATCATCATGTGCAATCTGTTTG | |||||||||
gi|49017149|gb|CO205974.1|CO205974 WS0091.B21_O11 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS0091_O11 3', mRNA se AGTTCAAGAAAGCCGTGGAAA EST sequence (targeted fragment marked with yellow): GGAAGCTTTGGGCCATTAGAGCGATCAAGAATTAGGGAAGAATATTTATTTATCAGTACGCTAAGCCGGAGAATGCTCTCATATTTTTCCACGGCTTTCTTGAACTTCCCGATCGGGAGTGTTGGCGACAGATCGCACCGCTAACAGATCCGCATACGAAGCTCAAGAAAGCCGTGGGAAGAATATTAAAGGGATTCAATTTTATTGCTTCTGCTGTGATCCGACTTGGTACTTCAGTTTCCAGATACGTAATATAACCCTATTCCAGGCACTCGGACAAGGTATCTTTACGTAATCTGTAGTTTTAAATATCTTCGATTATTGGCTGCTTTGATTGAATGTGCTGTTAAAGTTTTATGTGAGAGATGATCTCCTCAATCTTTGATCTGGCCTGGGGGTGCAGTAAAGGCCAATCTCAACTAATCCTGGAATTCATGAGCACGAATGTTTATTAAACCGGGAATAGCTAGTAGATATGTTCGTGCTTGGATCTTTAAAGTAAAAAAGAATTAAGTTTATATATATTTTTATTACTCTGGATGCTTATTTGATCCAAGATCCAGGATTAATATAATGGATAGATTTATGCAGGTAGATTCTCAGATTAAAATAAACCTGTACTGATAGCTTTTTATTTCCTCTCTCTTTACCTCTGCTGTCATTATGATACACAAATTTTCATCTCTCAATACATGTACCTGTTAATTTGTTTGTCATAAGCTTGAATTAATTTAACTTTTAA | |||||||||