miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CCCACGGCTTTCTTGAGCTTC
species: Picea engelmannii x Picea glauca
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|69393667|gb|DR476806.1|DR476806 WS00968.C21_I02 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00968_I02 3, mRNA s 

CCCACGGCTTTCTTGAGCTTC
 |||||||||||||||.||||
AGGTGCCGAAAGAACTTGAAG

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTTTTCACATAAAACTTTAACAGCACATTCAATCAAAGCAGCCAATAATCGAAGATATTTAAAACTACAGATTACGTAAAGATACCTTGTCCGAGTGCCTGGAATAGGGTTATATTACGTATCTGGAAACTGAAGTACCAAGTCGGATCACAGCAGAAGCAATAAAATTGAATCCCTTTAATATTCTTCCCACGGCTTTCTTGAGCTTCGTATGCGGATCTGTTAGCGGTGCGATCTGTCGCCAACACTCCCGATCGGGAAGTTCAAGAAAGCCGTGGAAAAATATGAGAGCATTCTCCGGCTTAGCGTACTGATAAATAAATATTCTTCCCTAATTCTTGATCGCTCTAATGGCCCAAAGCTTCCCCAATTCTTCAACTGTACCCGAAAGGAATCGTCTCTCTTTCCTTATGCAGAAGGAGGGCCGTCCATCGAATATCTTTAACTTCTATGGTCCTTATACTCTCTCCTGCTGTGTTATCGCCATTATTATCACCACAGAAGACTCATAACAACGAAATTTTCGCAAGCAATTATTGCACAAGAACGCCCATTACAGATGATGAAATCCATGCAGTCATCCGATCCGACACCTTCTTCCCGGAAAACTGCACAAGAACCAGACGATGGCCATCAGGATTATGGTGAACTTGGACGGGGTTCTGAGCAGCTCACGAGATTGGTCGTGCTCAGCTGGACCCAACATTGGATGCAACCAGGTTAACTCATACGAAAAGTGAAAGTCCCGTCGCTATTAAACCTAATAATATTTAAAACCCATGTGCTCGAACTTGTGGTGTCCTCATAAGATATATTGGTAA


gi|69380784|gb|DR473062.1|DR473062 WS00957.B21_P04 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00957_P04 3, mRNA s 

CCCACGGCTTTCTTGAGCTTC
 |||||||||||||||.||||
AGGTGCCGAAAGAACTTGAAG

EST sequence (targeted fragment marked with yellow):
TTTTTTGACAAATAATCTCACAGCTTTTCAAATGAAGGAAATGTCCTTCTGGGCGAAATTAGCAGTACATCTTGACTTTCTACATCTGTGCTACAGAAAGAAAGATTTGAAGCATTTAAAGAAGAGCGGATAGCTAAAAGTTAAATTAATTCAAGCTTATGACAAGCAAATTAACAGGTACATGGATTGAAAGATGGAAATTTGTGTATCATAATGACAGGAGAGGTAAGGAGAGAGGAAATCAAAAGTTATCGGTACAGGTTTATTTTAATCTGAGAAGCTACCTGCATAAATCTATCCATTATCTTAATCCTGGATCTTGGATCTAATGAGCATCCAGATCTAATAAACATCCAGACTCCAGAGTAATCAAAAGAAATATAAACCTAATTCTTTTGTACTTTAAAGATCCAAGGACGTAACATATTTACTAGCTATTCCCGGAGCAATAAACATTGACATGGACATTTATGTTCATGAATTCAAGGATTAGCTGAGATGGGCCTTTACTGCACCCCCAGGCCAGATCAAAGATCGAGGAGATCATCTCTCACATAAAACTTTAACAGCACATTCAATCAGAGCAGCAAATAATCGAAGATATTTAAAACTAAAGATTACGTACAGATACCTCATCCGAGTGCCTGGTATAGGGTTATATTATGGATCTGCAAACTGAAGTACCAAGTCGGATCACAGCAGAAGCAATAAAATTGAATCCCTTTAATAATTTCCCACGGCTTTCTTGAGCTTCTTATGCGGATCTGTTGGCGGTGAGATTGACCGCCAACACTGCCGATCGGGAAGTTCAAGAAAGCCGTGGAAAAATATGACAGTATTCTCCGGTTTAGCGTGCTGTTAGATAAAAATCTTCCCCAATTCTTCAACTGCGCCCGATAAGACGACATTCGGCGGGACCGAGGACTCGTCTCTCTTTTCTTATGC


gi|49017149|gb|CO205974.1|CO205974 WS0091.B21_O11 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS0091_O11 3', mRNA se 

CCCACGGCTTTCTTGAGCTTC
|||||||||||||||||||||
GGGTGCCGAAAGAACTCGAAG

EST sequence (targeted fragment marked with yellow):
GGAAGCTTTGGGCCATTAGAGCGATCAAGAATTAGGGAAGAATATTTATTTATCAGTACGCTAAGCCGGAGAATGCTCTCATATTTTTCCACGGCTTTCTTGAACTTCCCGATCGGGAGTGTTGGCGACAGATCGCACCGCTAACAGATCCGCATACGAAGCTCAAGAAAGCCGTGGGAAGAATATTAAAGGGATTCAATTTTATTGCTTCTGCTGTGATCCGACTTGGTACTTCAGTTTCCAGATACGTAATATAACCCTATTCCAGGCACTCGGACAAGGTATCTTTACGTAATCTGTAGTTTTAAATATCTTCGATTATTGGCTGCTTTGATTGAATGTGCTGTTAAAGTTTTATGTGAGAGATGATCTCCTCAATCTTTGATCTGGCCTGGGGGTGCAGTAAAGGCCAATCTCAACTAATCCTGGAATTCATGAGCACGAATGTTTATTAAACCGGGAATAGCTAGTAGATATGTTCGTGCTTGGATCTTTAAAGTAAAAAAGAATTAAGTTTATATATATTTTTATTACTCTGGATGCTTATTTGATCCAAGATCCAGGATTAATATAATGGATAGATTTATGCAGGTAGATTCTCAGATTAAAATAAACCTGTACTGATAGCTTTTTATTTCCTCTCTCTTTACCTCTGCTGTCATTATGATACACAAATTTTCATCTCTCAATACATGTACCTGTTAATTTGTTTGTCATAAGCTTGAATTAATTTAACTTTTAA