miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CGGCCAAGAATGACTTGCCCG
species: Picea engelmannii x Picea glauca
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|69371112|gb|DR470012.1|DR470012 WS00949.B21_G17 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00949_G17 3, mRNA s 

CGGCCAAGAATGACTTGCCCG
|.|||||||||||||||||||
GTCGGTTCTTACTGAACGGGC

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTTTTAGAAAGATGTTCAACAAATTGAAAAATTGAATTTAGAAGATTTGCAGAAATCCGTGTTCAATATCACTGTACAAGCATGCCGTGCTAGAAACTTTACTATAAATCTTGAAGCCCTTCATTGAATTCAGCGACATTGTGACTGGCCGTTGATATTATTTGTATCTGTAAATATTCAAATATCGGAAGATACTTCCTGCCATTATAAATCCAAGCAAACACAGGGATCTATATTGAACCAAAGGGCAGCCAGGACTTGCATAGTGAACAGGAGGAGGAAACGTTCCTAATAGCATTGCAAAGCCAGCAATATGGAGAGCAACTTCTCATACGTTATGATCAGCATAATCATGGCGTCCTCATGCGGGGCCTGGCATGAAAGGAAGAGAGCGATGCTTTGCCAAGAACAACCTACCCACAAAACTGCAATGTGTATGTGGAACCATAATCCACAACAGTATGCGGGCAAGTCATTCTTGGCTGAGTAACACTCTCGGCCTCTACATGCAAGAGCCTACACGAATTTCTTCACAACTAGCAGAGTTACTGGTTAAGATCGAACATCTCAGGAATCCCAGAGTAAGC


gi|69376817|gb|DR471824.1|DR471824 WS00954.B21_I01 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00954_I01 3, mRNA s 

CGGCCAAGAATGACTTGCCCG
|||||||||||||||||||||
GCCGGTTCTTACTGAACGGGC

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTTTTGGAAATAACATGCAGAGTTTAAACGTGTGATAATATGGGTACATTTTGCAAAGCAGAAACTACGCAGAAATCTATGTTCAATTAGATGGAATTCATTTTGTCCTCTTGACGCACTATACTTAAATGGAATTCATTTTTCCCTCTTGACGCACTATGTACCAGTAGTAAAATTGAGTATAGGCTTAGAAGCCCATGAATCCATTCTTTGATATTTTGTACACCACAACGTCATAGATTATTGGCTTATCATATTGATAATATTGAAGATACTTCCACCCATTATAATCCATGACAATGGCGATATGTGAACGAAGAGACCTGAACAACTTGCATACCGAACTGGAGCAGAAAACGCAACGAATGGTATTGAGAAGCAACGCCGTCGTCATGAGAAGCAACGCAACGAATGGTATTGAGACGTGAACACCATGATCATGATCTGACATGTAAAAGCAACGCCGTCGTCATGCAGGGCCCGGCATGAAAAGAAGAGAGCGATGCCGGGACAAGAATGCTTGCCGGGCAGACTGTAATGTGTATGTGCAACCATATTGCACGACAGGATGCGGGCAAGTCATTCTTGGCCGAGTAACACGCTCTACCTTTACATACGAGACGCTACACGAACTTCATATTCAGAAGAATTAATAACTGCATAAGATCTAACAGGTAATGAATCCCAGAGGAAGCGATGAAGC