miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TCATTGAGTGCAGCGTTGACG
species: Picea engelmannii x Picea glauca
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|69368595|gb|DR469183.1|DR469183 WS00947.B21_B05 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00947_B05 3, mRNA s 

TCATTGAGTGCAGCGTTGACG
. ||||||||||||.|| |||
GATAACTCACGTCGTAAGTGC

EST sequence (targeted fragment marked with yellow):
CTGAAAGATTCATCCGTTTCAAGGTTGAAACGGTGAATGGTATTAGTTAGATACCTCTTTCAGGCTTTGCAAGAGTAGCAATATATTGTGCTTACAGGATATCTAGTTTCTGTAACAATGTCGTTGCAATCGGTGCGTCTATCTTCGGCTGGCCTTGTTTTTCTACTCTCATTTGTTGCTTATTTCGCTGCCATCTCAAACGCAGCAATCCACAACTATACCTTCATTATTGAAAAGAAGACAGTTACCAGGCTGTGCAAGCAGCGTATAATAGCTACCGTTAATGGACAGCTACCAGGTCCAACGATTCATGTACGTGATGGGGACACTGTTAATATTAAAGCCTATAACAGAGCTGGCTACAATGCCACTCTTCACTGGCATGGAGTCGAGCAGATACGTACGGGATGGGCGGATGGACCTGCATATATTACACAATGCCCCATTCCACCAGGTGGACGTTATACATACAGATTCACCATTTCTGGACAAGAAGGAACCGTGTGGTGGCATGCCCATGTCTCATGGCTCCGCGCTACGGTGCATGGAGCTTTCGTAATCTTTCCTAAGAGAGGAAAACCATATCCCTTTCCTAAACCCCTTGCGGAAATTCCTCTTGTAATAGGAGAATGGTGGAACAACAACCCGGTCGCCGTTATTGATGAAGCAGTTCTCACAGGTGGTGCGCCTAATATATCCGATACCTTCACCATAAATGGACAGCCAGGAGATCTGCTTCCCTGCTCTAGCTCCGAAACTTTTCGATTCGCTGTAAAACAAGGAGAAACTTACCTTCTGCGGCTCGTGAATGCTGCACTCAATAGCGGGCACTTTTTCAAGATAGCAGGCCACGAATTTACTGTTGTAGCTGTGGATGCTTGCTACACCAAGCCATAC


gi|68775518|gb|DR451001.1|DR451001 WS00954.BR_G14 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00954_G14 5, mRNA se 

TCATTGAGTGCAGCGTTGACG
. ||||||||||| |||.||.
GATAACTCACGTCCCAATTGT

EST sequence (targeted fragment marked with yellow):
GTGTTGTTGTAACGCAATATCGCCTGTTGTTGCAAGGCACCCATATTGATCTGACTGGTATTCAAAGAATGGCCAAGCAAGCGGTTCTTGCTAGCCGTGGCAACCACATCATTGAGTGCAGCGTTGACGATAGAAATTCCACCAATAGATTTGATAATATCTATCTATTTGTGGAATGCCATTGATATTGTTAACCCTGCACTCAATAGTATGTTTGCCAATGGCTCCATGTACTATCTTCTTCTTCGCATTCATAAATTAAACAATCTGGCCGCCATTACAGAACTGTATCGAACAGGGTTGTCTAACTTGGAGAAGGCGAGTTCTCGTAATTGAGCTCAGGGTTTTCATCTTGAATAAGTTGAATTCTGTGGTGGCATGTGATGTTCAAATGCCATGAAGAAGAAGATGATGTTCAGTAATAAAAATTTAAAAATTGTAATTTATGCCATATTAATATTTTGTTGTCATTTGCATTATACTCCAAAAAAAAAAAAAAAAAA


gi|69376751|gb|DR471791.1|DR471791 WS00954.B21_G14 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00954_G14 3, mRNA s 

TCATTGAGTGCAGCGTTGACG
|||||||||||||||||||||
AGTAACTCACGTCGCAACTGC

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTTTTGGAGTATAATGCAAATGACAACAAAATATTAATATGGCATAAATTACAATTTTTAAATTTTTATTACTGAACATCATCTTCTTCTTCATGGCATTTGAACATCACATGCCACCACAGAATTCAACTTATTCAAGATGAAAACCCTGAGCTCAATTACGAGAACTCGCCTTCTCCAAGTTAGACAACCCTGTTCGATACAGTTCTGTAATGGCGGCCAGATTGTTTAATTTATGAATGCGAAGAAGAAGATAGTACATGGAGCCATTGGCAAACATACTATTGAGTGCAGGGTTAACAATATCAATGGCATTCCACAAATAGATAGATATTATCAAATCTATTGGTGGAATTTCTATCGTCAACGCTGCACTCAATGATGTGGTTGCCACGGCTAGCAAGAACCGCTTGCTTGGCCATTCTTTGAATACCAGTCAGATCAATATGGGTGCCTTGCAACAACAGGCGATATTGCGTTACAACAACAC