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mature miRNA: GAATGGGATGATGAACTGACA
species: Picea glauca
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|270051430|gb|GT739170.1|GT739170 GQ03231.B7P5_M24 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03231_M24

GAATGGGATGATGAACTGACA
||||.|.|||||.||||| |
CTTATCTTACTATTTGACGGG

EST sequence (targeted fragment marked with yellow):
AGGACTCAACTTCATCAGGCTTAAGACTCCATAAAATTCTGTTGGTGGTATTTCTTGCAGTTGCATTACACTATTATCTAAGTTCCAAATAAGAAATATTGTATCAGTTCCTCTTCCATCATTCTATAAAGACCTGCAGCAAGACTTGAAAAACAGCCTTTATTTTTTCATGGTGGAAGAATGATCTTCTACTTTGACATGGGCAGTTTATCATTCTATTCCCCTAATGCATTTCCAAGAAATTTGATGTGAATACCTTACACTGAAAACTATTAGTTCCATGCATTTTTGGAAATATCAACTGGCAAAAAAGGAGGGGTCTATATACTTTCCACACTTGTACAATATCAACTGATCTTGTACAATAGCTTGAGCTGTTGAATTTTTTGCCATTTCTGGTTTACGCAGTTGAAGGTTGCGAGGTATATGTAAGAGGAGTCTAGAATGGATATGGTTGTGAATCTCTTTTGGGGGATGTTACAATGAAGTCAGCCCTTAAAAAGGGTTGTCTTGAAAACACTTGTGCTTTACTTGAGTTATAGATGAAAATGAAATCATCCATTACNTTAAAAAA