| mature miRNA: ATGAAGAGTCTGGAGGAAGAA species: Picea sitchensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|260195405|gb|GT127049.1|GT127049 WS0478.CR_D16 SS-BD-32 Picea sitchensis cDNA clone WS0478_D16 3', mRNA sequence ATGAAGAGTCTGG-AGGAAGAA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTCTTCATGTGACCTTGAATCCCCTGATATATATTTAAAAATTAACAGCTACGGATGTCCTGGTAACTTCATATTGGAAAAGATCTTATAGCCACTTAAACAGAAAACAGAGAGAAACAACCTTCCAGTTCCTCGAATACATTATCATACCGTGAAATTTGCAATTTGTAGTCCTTACATATTTTCTCCTTCTTCCAACAGTTTTTCCAGTTGTCCTATGATCTATTCCTGAGTTCACACTCTGATATTTACAATAAAACACACTGCTCTACCAATATCCATGAAAACATAACTCATATAAGCATACTAAAACACCTCTTATGCTCACAACTTTGAGAGTTGTACACTTAAACCACATTTTTCCTCCCAGACTTTTCGTCCCAGAACAACAGGAATTCTCTCTTAACCTGAAGCTCCAGTAGAAGAATCATCAGCCTCTTTACTGCTGCTGCTGCTGCTGCTAAGAATGCTTTGGAGGGGTGCTAATGTCAAGAGATGTCCCATACTTTTTGAGAAGAGCGTCAATGCACCACCCATGACCATCATCCATAGTAGGCATCCTGACTTCCACAAAAGGAACCACAGGACCCTCAGAATCTGGCATTGTCACTCCTGCAAATACTCTCAACACATTGGATGCATCAACATCCATACAGACATTGATTACTGGAATGCCTTTCGGAGCAGGTGGGATTCCTGACACCGTAAAAAATCC | |||||||||
gi|218443689|gb|GH281366.1|GH281366 WS0442.CR_M20 SS-BD-29 Picea sitchensis cDNA clone WS0442_M20 3', mRNA sequence ATGAAGAGTCTGGAGGAAGAA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTGATCAGGAACCAGATCAGTCTTCAAATTTGGTATTCGTAAATATGTGTAATCAGAAGAGGAAAATCCTCTCCTTCCTAATTCCATGTTTTCCTACTGCTTGCACACTCTACACAGATTGGTGTTTACATGGATCCATTGGTTGACTATATAATTGTTAGACATCATTTTTGGGATTAATCCCGAAAATTATATCTAATATGTTGCACTGTGGAAGCCCCTCTATGCTTATATAATTGTTGTATGGTAGCATGTTCCTAAAATAAAATTTATTCCTTGCAGTGGATGATGAAAAGATTCCCTGATGAATTATCAACCTTTAAGTTATTAGAGAACAGGCCATTCGATACTATGAACGGAGAACAGCCCCATCAGTTATCTTCCAGGTGCCCTTCACATTTGTCATCTCATATCTTGTTGTGTATGTACTACGATATGAATCATTATGCTCTGGATGACTGGTATCAATTAAACGAGCAGCCTCCTGCAGTGTTGCCTCCACCATAGCTCTCATGCCATCTGTCGAAACTGTGACACTCTCAATGGTCAGCCCCAGCAGACTGTATTCCCAGAACCATCCATGCTCTGCAATATCTTTTGCACGCTCTGACCAGATCTTCAACATTTGGCCATCCAGAATCTCTGAGAGTCGAGATACAGCATGATTAGGCCCAAGAGCCTGAGACTTTAACATCTGCCACTTGCGTACTAAATTCTCTGCCAATCTAGCATCCATTTTTGGTGCTCCATAATTGAGATTGTCACCTATTGTAGTTGAGAATGGAACTTCCTTCAGAGTCTTCATGGAACTGTGTTGGCCAGGTAAATATCCGAGTCCTGCAATAGCAAGTACCCCCACACAACACCTGCACACA | |||||||||
gi|218450789|gb|GH289986.1|GH289986 WS0473.CR_B02 SS-BD-32 Picea sitchensis cDNA clone WS0473_B02 3', mRNA sequence ATGAAGAGTCTGGAGGAAGAA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTAAGCTTTAATGCCATTTCTGCTGATATGACATGACATGTATTGATATTCCAACCCATCAAACAAACGAAACCAAACATGCGAATGCGCTCAGAAGAGCAGCCAGCATATAGACTTCCTGCTAGCCTTTTGAAACCTTCCTTTCTATTAGCGTACAACAAGACTCCGCAAAATCCATTAATGCATACGAGATCATGTACAATATGCACAACCGACGACATTATCATTGTACAGGATCCTCTACAGTCAAAATTTCTTACAAAAAAAAATGTCCCACAGTTTCAGAGATAGGGTCCCTCGAACAACCCGCCGTTGAAGGGGTCTGTGAACAACTCGAAAGTATCCTGTTCTTCAGCGCTTGCATACCAACACAGCTCCAATAGCTGCTCCTCCCCCGCTTCAGGGTAATTATCGAAGATATTGGCAATGGTGCTGTCGTAAGGGTCGCTGTTCACGAGCTGCAGGGTATTAGGGCTTGGAGGTATACCCAGTTCGTCATCCGTTGCTTCAAGAAGATACTCAATGTTTATATCATTGCAACAATTTACAGAATCGTCGACATAAGCGCTGCCGGCAACACTGGACGCACTGTCGGAGACGGAGAGCGCACTGCCACAGTTTTCGTCAGCATTGTCACTGCAAACTGGACCGCTATTTTCCGTAAAACAGCCCATTCGGTCGTCAAAAGAAGGGTACTCGCATTGGATTTCTTGCTCGAGGCTCTTCATCACGTCGGAAATCATGTCGTCCTCGAAATTCTCACCGGTGAAACCAGCGTCGGCGTCGGGGTTGTG | |||||||||
gi|166904244|gb|FD739874.1|FD739874 WS03948.C21_F21 SS-B-24 Picea sitchensis cDNA clone WS03948_F21 3', mRNA sequence ATGAAGAGTCTGGAGGAAGAA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTATTAAAATTTCTCTGATTTCAATTTCATTTTAAGAAAAAAAATCTACAACGATGACGAAACGTTTCCTTTGCTCAACAATCCATCCTTCATTTTTTACAATATAGCTATATCTCGGCGGTATGACATACAATCACAAATTATGTTAATGAGTCCTGACATTCGTTACATGCCAACGGCAGTTTCCAGTCTCCATGTCTCAGAAAAATCCCCCTCAAATAGCATGCCTTGGCTTACAAAATCTCTGTTCATATAATCCTGCAGCTGGCTCGCATTCCAGGCATTTTCGTACTCTGCAAACTGTTGAAAGTTTTCGAAGCCATCCTCGAAGTGCCAGTTTTCTCCCAGGAATTTGAGATCCGAGCTCTCCCACAAACCGTCGAAGGTTTCCTTAGGAGATAGACAGGCTTCTTCTTTCAAGTCCAGAACGGGGCTCGGGGGAATGCCGAGGTCATCATCTGAAGCTTCCAGGAGATAACACAGATCAATCCTCGAGTCCGCATCTACGGTTTGGCCTTCGCGGCTGCTAGAAATATCGGGGGCCGCTGAGTTATCCAAAGAGTTGGAGCGACAAGAAGTGGAACAGGTTGCGGCAATCTCCTCTTCCAGGCTTTTCATGACTCCATTTACGAGCTCCTCACTGGGAGCGCATTCTTCTTCTTGTTCGTCGTCCGCTAAGTTTGGACCTAATTGCAGTAGATGAAGAAACCGGTCTGTCTCTTCGCCATGGAAGCGTTTCGGCTCTCGGACGTAAATGGACTCCGGCTGAGCCTCGGACTCGCGGCCGCGTTTTCTAAACGTATCAGACATGATTGAGAGGTGGCCCGAAGATTCTAACACGGAACACAGCGGAGGTGC | |||||||||
gi|69433638|gb|DR488826.1|DR488826 WS02910.BR_B17 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02910_B17 3, mRNA sequence ATGAAGAGTCTGGAGGAAGAA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTCTTCGCTGAGATCCTCAACAGATCTTTTGATGATTGATTGATTGCTCCATTCTTCTTTTTAAGTTTCTTCAAGTTTTTAAAATAGTCGGTTTTCCCTTTCTTCTCTTTGCATGGTTCTGGTTGTTTTATGTCCAGCTCTTTCTGAGAATTTTGTTTTAGCAAAAAGGGCAAGGACTGTTTCTTTTCCCAAGCAAAATCATGACCAACTGGTAGTCTGTACTGTTCAGTTGAGCTTTTCTGATGCTCAAGAAGATTTATTTTCAGTTTCTCTAAGTTTTGCCCTTGCTCCTCAGCATCTGAATAAAGATCAAACATGACTCTCTCTTGGGGATATTTCCTTGAATTTTTTGAAGATATCATATTCACTTTTTCCTTTGATAGTTCTTGTGGGCGCTTTCTCATGCCCTCTTCCAATACTTTTGCCCTTTCTCTTCTTTTTTCAGAATCTTCAAAAATTGCCCTCCCTCCTGCAAGATTGCTTTCTTGCTTGAATCGTCCAATGTTTTCACTGAACTTTAAAGGGACCCGGACACCTATCCTGTTATACATTTCTTGCTCCTTTATCCTTCCCAGCTTTCTGCCATGCAGTGAGCTACTT | |||||||||
gi|149968187|gb|ES868212.1|ES868212 WS02822.CR_E11 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02822_E11 3', mRNA sequence ATGAAGAGTCTGGAGGAAGAA EST sequence (targeted fragment marked with yellow): AAGAGCTCTTTTTTTTTTTTTTTTGCGAACTCGAGTAATATTCAACAGTGATTGATACAAAAATATATTTCATATTACATGCAGATTGTTTCTTTCATTCTATCTCAGTTTATCTACAAGACATGGGACGTTGCTCTCCTCCTTCGGAGGAGATGTCAAACAAACTACAATTAGTGCTCGCAAAATCTCTTTCCTGGTTCTCATCAGACGCATAATCATAATACTCAGGTGTCTGCAACTGCTGCAGCATTAACCAGTCGATGTAACTATTAACAGCAAGCTGGTCTTCCAACTGCCACAATCCTTCCAAATTACAAGCATGCTCTGACTCTCCCAACACCTGGCTCTCGGCAACAGCAGAATACGCATCCTCGTACACAGACGGGCTGGGCGGGATGCCGAGCTCGTCATCCGAAGCCCTGAGCAAGTAACTCATCTCATCCATATTCGAGAAGTCGGAGGATCGAATCTCCTCGCCTCTGCTGGAACCGCTGATTTCTTCCTCCAGACTCTTCATAACACCGCAAACAACCTCCTCCGCGGCCACAAATTCTTCAGCATTTCGCTCCCCGCAGTCGGCATCCTCCTCCAGGATACTGATAAGCTCCTCTGCCCTAGGGCTCAGAGGGCTCAGCCCATGAAAAAAACGCTTAGGCGGCGGCGGGGAGCGAAAAAAAAAAAGGGGGGGGGGGGGATTAATTTAATTAA | |||||||||
gi|70314301|gb|DR527341.1|DR527341 WS02724.C21_I06 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02724_I06 5, mRNA sequence ATGAAGAGTCTGGAGGAAGAA EST sequence (targeted fragment marked with yellow): GATCACACCTTACACTGAACACTGAACTCTAACCGTTGAAGTACTTTACAGTGGATCGCTTTATGCACACATTCAATCAATCAGTCACTCCTTCCACATTCTCAAGCACACTTGTTTTTTCAACGGAAATGTTTTCTTAAAACAAATCTGCTGTTTCTTGATTGCTCTGTCGATGACTGGAGACTGGACTGCATTAGGTAGGTTGTGATCTGCGAGCTTTCTGTTCGGTTTTATAGGGTGGATATGTCAGAATGGTGGAAGCTTTAGTTCACGGGATTGAACAAATAAGACAATAAGTCACTGGCCTCTTTCAATGGCCGATCAGATACTAAACAAATGGGCTCTCTGCCTACTCTGAACAGAATGACGGATGGCCACTTGGTTTGCAACCGTTGCATGTAAGAGATAGACTGATGGAGAATCACATGTTAACAGAGCCTAATGCTTTCAGTAGTTTGATAGCTGTTTCTCCAAGTATTTCTTCAGATTCTTCATCAGATTTAGACACTGAGTCAACTGGGTCTTTCTTCTATGATAGGAGCATAACCCTTGGAAACCTAATTGGCCTTCAGTCCGATTTGGCGGTTTCTACTAGAGTTATTGATGGTCGAGAACATCCTTCCTCAAAGACACCCAGAAAACATAAACGCAATTCAAGATCCAAGTCATGGTGGGGTTTGTGTGG | |||||||||
gi|70295746|gb|DR521185.1|DR521185 WS0279.BR_D13 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS0279_D13 3, mRNA sequence ATGAAGAGTCTGGAGGAAGAA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTGAAACTCTGTATAATACATCTATATCTCGGCTGTACGAGATACAATCACAAATTATACAGTGTTTATGAGCCCTGACATTTTTTACATGCCACCGGCAGTTTCCAGTCTCCATGCCTCAGAGAAATCCCCTTCAAATAACATGTATTGGCTTACAAAATCTCTGTTCATACAATCCTGCAGCTGGCTCGCATCCCAGGCATTTTCGTACACTGGAAGCTGTTGATAGATTTCAAAATCGTCCTCGAAGTGCCAGTTTTCACCAAGGAATTTCAGATCCGTGCTCTCCGACAAACCCTTGGAGGCTTCCTTAGGAGATAGACAGATTTGTTCTTTCAAGTCCAGAACGGGGCTCGGGGGAATGCCGAGTTCATCATCGGAAGCCTCCAGGAGATAACACAGATCAATCCCCGAGTCCGTATCTAGGGTTTGTCCTTCCCGGTTACTAGAAATATCGCAGGTCGCCGAATTATTCCCCGAGTTGGAAGAGCGATAAGAAGTGGAAGAGGTCGCGGCAATCTCTTCCTCCAGGCTTTTCATGACTACATTTACGAGCTCCTCACTGGGAGCACATTCTTCTTCTTCTTGGTCGTCTGCTAAGGTTGGATCTAATTGCAGTAGATGCAGAAACCGGTCTGTTTCTTCGCCGTGGAAGAGTTTCGGCTCCCGGACGTCAATGGAATCCGGCTGAGCCTCGGAGTCACGACCGCGTTTTCTGAGCGTATCAGACATCATTGAGAGGTGCCCGAAGATTCGAACACGGAACACAACGGCGGTGCAGAGACGAAAACAGGATGATAGTCCGCCTCCAGCGAAGAACTGCTCTTCGTGCTATTGTTGCCTAGATAACTGACAGTACTGGTA | |||||||||
gi|292506882|gb|GW725162.1|GW725162 WS02929.C21_O20 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02929_O20 5', mRNA sequence ATGAAGAGTCTGGAGGAAGAA EST sequence (targeted fragment marked with yellow): TTAATTAAATTAATCCCCCCCCCCCCCCGGACTTTGTTGGCCATCGAGTCAACCATCTTACTTGCAGTGTCGTTGTAAGTTACACGCGAATTGAAAGATAGGCACCTTGGGTTACGCATTCGCTTTAAAGTAATGGGCTGCCTGCCTGCCTGTTTTACGGGCGCTCATGTTACGAAATGTAGGATATCGGTCTGATTAGTGTCCGCGAAGCTACCCACCGAGATTTAATCTTCCATTATTTGGTATTCGCTTCAATTTCTCGGCCATCTGAAATTGCAGGTAACGGAACTTCGCGGGACTTGGAGGCAAAATCTTCATCATACATAAATAAATTCTCCATCAGACTCTTCATCCTTCTCGTCTCGTTTTATCGGCTGCCAAACCTCTTTCAGCCATGGGATGCTCTGCTTCCTCTGCAGGGAAATCATCAGGGCTGGTCCGTGGTTCAACTCTTGAGAACTCTGGCATGTCAGACTCGAAAAACTTGCGGATAAAGTTGGTTCTTTTGGGTGACTCAGGTGTCGGTAAAAGTTGCATAGTTCTACGTTTTGTACGTGGCCAGTTTGACCCTTCATCAAAGGTGACAGTAGGAGCATCTTTTTTATCACAAACAATTGCATTGCAGGATTCTACTACTGTGAAGTTCGAGATATGGGATACTGCTGGTCAGGAAAGGTATGCTTCTTTAGCACCTCTTTATTACCGGGGGGCATCTGCTGCAGTGATTGTGTATGACATAACCTGTATGG | |||||||||
gi|49044355|gb|CO222040.1|CO222040 WS01014.B21_M09 SS-R-N-A-11 Picea sitchensis cDNA clone WS01014_M09 3', mRNA sequence ATGAAGAGTCTGGAGGAAGAA EST sequence (targeted fragment marked with yellow): GGAAGATAACAATAATTCTACTGCCAGCTCCAGTCAGTGAATAGTAAATCATCAATTTTATATGTACAAGTACTTGCATGTACAATCTCACAAGGATTGAATCTCAATTTTTGAGATAAAAAATCCTGCTATCTGTTTGCAACCATGATCAGGACAGTGATCAAGCAAACTCTGTTCCAGGAACGAGCATGAATGATGAATGATGTTTTGCTACTAATTATTAATGAGTCGTGTATCTTCCATTATATTTGAGAAGATGCATCCATGGATCACGTGTTTTCTTGTTTTATGTCTAGCATGCCATGTCCATTGATAAAGTGCTATAGTTTATATTGCACTTATGAATGGATTTGTTAGGCACTAAATTCTTGTCTTCCATCAGACTTTTCATTTGTTATTAATACAGTTCTAATTTTGTAATGCTCAGGCAATAAGAGTAATCATCACAAGTATATTGTGGTCTTTTAAAAAAAAAAAAAAAAAA | |||||||||