| mature miRNA: ATGAAGTGTTTGGAGAAACTC species: Picea sitchensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|260195664|gb|GT127308.1|GT127308 WS0478.CR_O20 SS-BD-32 Picea sitchensis cDNA clone WS0478_O20 3', mRNA sequence ATGAAGTGTTTGGAGAAACTC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTAAAACCGGTAAATTCGAGTTTATAGAAATGCTAGTTGCATTTTAAAGCACTTTTACAGTAATAGAAGCTTACATCTGATTAAAATCAATCAAAGGCATACCAGTTCATCCAAACATTTCATATGCTTCGAGTTGAGCTCTCAAGTTCACAAGTTGTGCCATGAACTCTCTAGTCAAGTTCACACACTCGGGCATGGACTCTCTGCTCTAAGTAAAGAAATCATAAAAATCTACATCAAGCCCCCGGATGTTGCAAGATGATGAATAGTTTCCTCATGTTGAGACACGTGAAATTCTAGAGTAGCCTGCCATAACCAACCTCATACATGGATCTTCAATCAGCATATGTTAGGTACTCAATGAATGGTTTGGGGGCCGAATTGATAGACAGAAGTTCTGATCTTTTAGCCATTTCAAAGTCCTCGAATTGAAAAGCAGGTGCACATGTGCAGCCAATTAATGAATAGTGCATTTCGGGGTCTCTAGGTGGGGCTTTAACCAGCAGGCTACCATCATTGGAAAAACTCTTCATATCATTAGTTGGGTATGAGCCAAACCAAACAAATGGTGGCACTGTGTACTGCAATGTTTGACCTGCTCTCAGATCAGGACCCAAC | |||||||||
gi|49041605|gb|CO219290.1|CO219290 WS0106.B21_L19 SS-R-N-A-11 Picea sitchensis cDNA clone WS0106_L19 3', mRNA sequence ATGAAGTGTTTGGAGAAACTC EST sequence (targeted fragment marked with yellow): TCATGAGACAGGCCGAGTTTCTCCAAACACTTCATTTCAATTCCCTCAGGCTGCAGGATGGTTCAGTTGTCAATATGTCGGTACCGATTGTATTGGCCATTGATGACCTGCAGAAGGAAGCAATCGGGCACTCGAATGACGTTGCATTGCTGGACCCGAATGGAAAATTTGTCGCAATTCTCAGAAAGTTAGTACACCTTCTTTGTACCTCTTATTGTTTGGTTTTTATTTCAAAGTGATGGGAGAAACAACAAAGAGTGAGTTCCTTTGGCTGGGGTGCCAGCTTTTAGTGTTTTTATATATTCCCTAAAATCTCCAGGGACTTGTACCTGTCTCATCCCTTAGAGATTTCTGCCAAAAGGGCATAGACATATGCTGTGATACCAAGTTACAAAAGGGGTTACAAACTGAACAATGTGTGTAAATGGATGTACATATAACATTAGTAAGTACAATGGGTACATATTTACATGTCAAAAGAACCAACATAGATAGATGAAGATTAACACATTTAAAAGCAAAAGGCTATCTACAATATGCCCATTTTGACTTTGAAAAAAAAAAAAAAAAAA | |||||||||
gi|138312602|gb|ES255889.1|ES255889 WS03727.C21_H16 SS-B-N-22 Picea sitchensis cDNA clone WS03727_H16 3', mRNA sequence ATGAAGTGTTTGGAGAAACTC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTCGCATATACGTAATATTGAACTCGGAATTTACGAGAATTGCAAGAAGAATTCGGAAATACACGCTATACTGCCTTAAATAAACAGCATTACCAATAGGAGCATATGCACCCCAAGCTTCAAACACTCAAGGGATAGCAACCCTGAGAAAGGTAATATGCATTTAAAACCGGTAACTTCTAGTTTATAGAAAAGCTAGTTGCATTTTAAAGCACTTTTACAGTAATAGAAGCTTACATCTGATTAAAATCAATCAAAGGCATACCAGTTCATCCAAACATTTCATATGCTTCGAGTTGAGCTCTCAAGTTCATCAAGCCCCCGGATGTTGCAAGATGATGAATAGTTTCCTCATGTTGAGACACGTGAAATTCTAGAGTAGCCTGCCATAACCAACCTCATACATGGATCTTCAATCAGCATATGTTAGGTACTCAATGAATGGTTTGGGGGCCGAATTGATAGACAGAAGTTCTGATCTTTTAGCCATTTCAAAGTCCTCGAATTGAAAAGCAGGTGCACATGTGCAGCCAACTAATGAATAGTGCATTTCGGGGTCTCTAGGTGGGGCTTTAACCAGCAGGCTACCATCATTGGAAAAACTCTTCATATCATTAGTTGGGTATGAGCCAAACCAAACAAATGGTGGCACTGTGTACTGCAATGTTTGACCTGCTCTCAGATCAGGACCCAACACAGTCTGTTTCACTACCCCATTAGGGTCAAGCTCAAAGACCGTGAGAGGCTCTCCCAAGTAGAAATGCCACGTTTCGGCGCAAGGAATTCGATGGAAATGGGACACGCT | |||||||||
gi|218451758|gb|GH289741.1|GH289741 WS0473.C21_G18 SS-BD-32 Picea sitchensis cDNA clone WS0473_G18 5', mRNA sequence ATGAAGTGTTTGGAGAAACTC EST sequence (targeted fragment marked with yellow): GGGGACGGTAAACACGGAGTGGCATTGAGAAGCAGAGGCATTTACGGTAACCACGGAGTGACATTGAGGTGGGACGAAGCTGTAGAGGCCAAGTGGGTATCGGCACGTTGGGTGGGAGATGATGGAGAACGTGACCATTCGCTTACATAATTCTCTTGGAAGCGAGGGCGTTCATGTATCATTTTGTTCTTTGGGAGGAAATGGGGTTTTATCAAGCACTTCATGGAACCAACAAATGCAGCCCTTGATGTCTAAGTTTGTAGGGGCCAATCTCAAAACCCAAACGCTCAAGTCTGGAAGGGAATATTGTGTATCTCACTACCACTCCTTTGGAGCATTACATACGCAAGCAGTAGCAGATACTAGTGCCTCTGAGGAAGTTGATGAACTAGCTGACATTGATTGGGATAACCTAGGTTTTGGAATCCAAAAAACGGATTATATGTACCTCATGAAATGTGGCCAAGATGGAGAGTTTTGTGAAGGAGACCTTCATCCTTATGGAAATATTGAGCTAAGCCCATCTGCTTGTGTCTTGAATTATGGACAGGGTGTACTTGAAGGCTTAAAAGCACATAGGAGAGCTGATGGAAAAATTCTGCTCTTTCGTCCAGAAGAGAATGCCCTGCGAATGACAATGGGTGCAGAACGCATGTGTATGTCAGCCCCATCAGTAGAACAATTCGTGGAGGCTGTAAAACAAACAGTCATGGCCAACAAGTGCTGGATACCGCCCTTTGGCAAAGGCTCTCTTTATATCCGCCCTCTACTTCTTGGTAGTGGAGCGGTTTTAGGACTTGCCCCATCTCCAGAATTTACTTTTCTTATATATGTTTCTCCTGTTGGTAACTATT | |||||||||