| mature miRNA: CAGCCAAGAATGACTTGCCCG species: Picea sitchensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|70242117|gb|DR503304.1|DR503304 WS0298.B21_K13 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS0298_K13 5, mRNA sequence CAGCCAAGAATGACTTGCCCG EST sequence (targeted fragment marked with yellow): TCCCGGCTCCAATTACACATCTTATTCTCTTACTCTGAGATTCATGTAATTTTTTTCAGTTATGAAGAAATTCGTGTAGGCTCTCGCATGTCGAGGCAGATAGCCATACTCAGCCAAGAATGACTTGCCCGCATACTGTTATGAATCATTGTTCCACATGCGCATTTCAGTCCTGCGGGTAGGTTATTCTTGGCAAAGCATCGCTATCTCCTTTTTCATGCCAGGCCCTGCGCGAGGATGGTGTGTTATTCACGGATCAGATCGTTATCATCGAATATATCTGCGTTTTGGTAACGAAATAATTTATGCAGAAGTAGCTCTTCATATTGCTGGCTTCTCAATACCGTTGAGAGGGTTTCCTCCAGCAGTTCTCTTTAGGAGTTGTTGCGTTCCGTTGGTTCATATACCCCTGTGTTTGCATGAATTTATAATGATGGGAATTATCTTCCGATATTTGAGTAGACACTCTCAATTCACTCAAGGGCTTCAATTCTTATATTACAAGTTTTAGCATTGTGTGCTTGTACAGCGAGAAACTGCAAATTTTATATGATTGAATAGATATTTTTGCATAAAAAAAAAAAAAAAA | |||||||||
gi|149980010|gb|ES880035.1|ES880035 WS02942.CR_J02 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02942_J02 3', mRNA sequence CAGCCAAGAATGACTTGCCCG EST sequence (targeted fragment marked with yellow): AAGAGCTCTTTTTTTTTTTTTTTTATGCAAAAATATCTATTCAATCATATAAAATTTGCAGTTTCTCGCTGTACAAGCACACAATGCTAAAACTTGTAATATAAGAATTGAAGCCCTTGAGTGAATTGAGAGTGTCTACTCAAATATCGGAAGATAATTCCCATCATTATAAATTCATGCAAACACAGGGGTATATGAACCAACGGAACGCAACAACTCCTAAAGAGAACTGCTGGAGGAAACCCTCTCAACGGTATTGAGAAGCCAGCAATATGAAGAGCTACTTCTGCATAAATTATTTCGTTACCAAAACGCAGATATATTCGATGATAACGATCTGATCCGTGAATAACACACCATCCTCGCGCAGGGCCTGGCATGAAAAAGGAGATAGCGATGCTTTGCCAAGAATAACCTACCCGCAGGACTGAAATGCGCATGTGGAACAATGATTCATAACAGTATGCGGGCAAGTCATTCTTGGCTGAGTATGGCTATCTGCCTCGACATGCGAGAGCCTACACGAATTTCTTCATAACTGAAAAAAATTACATGAATCTCAGAGTAAGAGAATAAGATGTGTAATTGGAGCCG | |||||||||
gi|49042218|gb|CO219903.1|CO219903 WS0108.B21_D02 SS-R-N-A-11 Picea sitchensis cDNA clone WS0108_D02 3', mRNA sequence CAGCCAAGAATGACTTGCCCG EST sequence (targeted fragment marked with yellow): GGTTTCTGTGATGTGTATACAACCATGACAGGTCAACAGTGTCCAACAATGCTTCAGGGTTGGTTGAGAAATTAACCTATGCATCTGATACTTTCCAAGGCAATTCATTCTTGGCTGTTTGTGTATTTGCTCGTGGACTTCTGATCAGGTCATGATAAGATTAGAAGCTATTTTATTCTGAACAATTCCACATGTAAACTATCATGTCTGTAGGGTTTTTCGTGATCTGAATCAGTAGGGTACAGTGATGGTGTGAGATACCAAACTATATATTTAATTACGTTTCATGTGATATGGTCAAAACATTGAAGACTCCAGTATTCGATCTAGTATTACAAATATTCCAGTACGATGCATGTTTTGTGTATTAGAAATGTATTAACATTTTCATGGTTGTTATGAATATGTTTGGGCTAAAAAAAAAAAAAAAAAA | |||||||||