| mature miRNA: CGGACCAGGCTTCATTCCCCT species: Picea sitchensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|218445592|gb|GH284493.1|GH284493 WS0453.CR_P10 SS-BD-N-30 Picea sitchensis cDNA clone WS0453_P10 3', mRNA sequence CGGACCAGGCTTCATTCCCCT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTGACAAATAACATTTCTTAGGTTATATTTAAAGTTGTTCAGACAAATAAGCTTTTCTCTAATTTATTACAACAAATAAGCTTTGTTGTTCAGACCTCCAGATCTCTATACTAGGTCTGTGCAGACAAATAAGCTTTTCTCTAATTTATTACAACAATAACATCCCTGTTATTCAAACCAAATACTTGGATATATCTTATTTCTATACCGAAGAAAACTATCCCCCGTTACTCAAACCAAACATAAGCAATGTACACTGATGAAAACTAGCATAGCATAGATCCCATTCCAGGCAGAAGTGGATAAAGTCTTCTGAGATTGAAGTAGCTAAAGGCATCTGTGGTAAGAACGATCTACTGTAGAGTTAAATAAAGTATTCGTTGTAAACAAACAGTCATTGAGAAGAAGATGAAAATGTGCAAAACGCTATATGAATCTTACCTTGTTACCTTCTGAGAACTGCTATAACTTTTTGCAACCAGTGAAGTATTTTTGGTTTGGAGTTGAGGGGAATGAAGCCTGGTCCGGCATCACTCAGTCTGATAATCAATTAGTATATGAATCTGAATGACCTCGAGCCAGACAACAGTCCCCACAACGAATAACCAATGATCAGATCAGCCCAGGGAATATCGTTGGCTTACAATCCGTGCAAGCTGGTCGGACATGCAACATAGATTAGGTTAGCGAAAACCACGGACGGTGATCTCGATCAGAATGAAAATAGTGTCTGGTGGTGAGACAACCATGGACTGAAATTGAACATGCAAAAATATATAGCCTGAATGAACACTACAAGACCAAAACCTACAGCGAA | |||||||||
gi|69443424|gb|DR492039.1|DR492039 WS02919.CR_C18 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02919_C18 3, mRNA sequence CGGACCAGGCTTCATTCCCCT EST sequence (targeted fragment marked with yellow): AGATGCCCGGGATGAAGCCTGGTCCGGATTCTATAGGCATTGTGACTATTTCTAACAGTTGCACTGGAGTAGCTGCACGAGCTTGTGGCTTTGCAGGTCTCGAACCTTCAAAGGTCGCAGATATTCTTAAAGATCGTCCCGCTTGGCTTCATGATTGTCGATGCCTGAATGTTCTGACTGCATTTCCTACAGGAAAAGGAGGGACAGTCGAGGTTCTATACACGCAAATGTATGCTCCAACGACATTAGCCCCTGCTCGGGACTTATTGACTCTGAGATACACATCATTGTTGGAAGATGGCAGTCTTGTGGTTTGTGAAAGGTCACTGACTGGTATTCAGAGCGGTCCAAACATGCCCTCTGTCCAGCACTTTGTAAGAGCACAGATGCTTCCTAGTGGTTATTTGATACGTCCCTGTGAAGGTGGGGGCTGTATAATTCATATTGTTGATCATATGGACTTGGAGCCTTGGAGTGTTCCTGAGGTTATTCGTCCACTCTATGAATCATCTGCTGTACTTGCCCAAAAGATGACCATTACGGCATTGAGACATTTGCGTCAAGTAGCTCAAGAGGTCTCAGGTGAAGTGGTTCTTGGTTGGGGTAGGCAGCCAGCTGCTCTGCGGGCATTTAGCCAGAGACTGTGCAGGGGTTTCAATGATGCTGTGAATGGCTTTGTAGATGATGGTTGGTCTTTGTTGGGTAGTGATGGGGTGGAGGATGTGATCATTGCCATAAATTCAT | |||||||||
gi|70289878|gb|DR519274.1|DR519274 WS02751.CR_K10 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02751_K10 3, mRNA sequence CGGACCAGGCTTCATTCCCCT EST sequence (targeted fragment marked with yellow): AGATGCCCGGGATGAAGCCTGGTCCGGATTCTATAGGCATTGTGACTATTTCTAACAGTTGCACTGGAGTAGCTGCACGAGCTTGTGGCTTTGCAGGTCTCGAACCTTCAAAGGTCGCAGATATTCTTAAAGATCGTCCCGCTTGGCTTCATGATTGTCGATGCCTGAATGTTCTGACTGCATTTCCTACAGGAAAAGGAGGGACAGTCGAGGTTCTATACACGCAAATGTATGCTCCAACGACATTAGCCCCTGCTCGGGACTTATTGACTCTGAGATACACATCATTGTTGGAAGATGGCAGTCTTGTGGTTTGTGAAAGGTCACTGACTGGTATTCAGAGCGGTCCAAACATGCCCTCTGTCCAGCACTTTGTAAGAGCACAGATGCTTCCTAGTGGTTATTTGATACGTCCCTGTGAAGGTGGGGGCTGTATAATTCATATTGTTGATCATATGGACTTGGAGCCTTGGAGTGTTCCTGAGGTTATTCGTCCACTCTATGAATCATCTGCTGTACTTGCCCAAAAGATGACCATTACGGCATTGAGACATTTGCGTCAAGTAGCTCAAGAGGTCTCAGGTGAAGTGGTTCTTGGTTGGGGTAGGCAGCCAGCTGCTCTGCGGGCATTTAGCCAGAGACTGTGCAGGGGTTTCAATGATGCTGTGAATGGCTTTGTAGATGATGGTTGGTCTTTGTTGGGTAGTGATGGGGTGGAGGATGTGATCATTGCCATAAATTCATCTCCAAGCAAATTTTTAGGTTCTCAACTTGCTTCTTCTGATGGCATTTCAGCTCTTAA | |||||||||