| mature miRNA: TCACATCTGGGCCACGATGGTT species: Picea sitchensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|138331275|gb|ES261905.1|ES261905 WS0394.C21_K04 SS-B-24 Picea sitchensis cDNA clone WS0394_K04 3', mRNA sequence TCACATCTGGGCCACGATGGTT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTGGGCAGAGAAAATAGATCGCCATCTATTAACACTTAAATCAGAGCTAATATGAATATCTGCGTATATATCTATACAGAGAACAGAGATCCATGAATCTGCGCGTATATATTCAATACGGATATCTGCGCATATATCTATCTATAAAAGAGAGAAAATAGATCTCCGTCTATCATTATTTATTAAATCGGAAGCAATATGGATCTATGCAGATATACATATCTACTGAACAAAGAAAATACCCAGATGGACAGAGGCTGTTGCAATGGCCGCTTCTATTTGAGGAGTCAAGTTTGCCGAGATCCATGTAAGCAAAGACGAGGGTATTCTTGTCGTCTTGGCCACGGTGGTTCTGAACATCCTAGACGATCATAAACCACCGGGGCCCAGACGACAATAACACTTTCGCTTCAGATTCTTCTTCTTCCTCCAGATCAACTGGCAGAGTCTGACAAGAGGAGAGGATGAAATGATCTACACCATTTCGGCAGAGAAAATACCCAAATGGAGATGGACTGCCGGTTCCTCCAGAAACAGTCAAATCCATGTAAATAAACGGAGGCGAAGGTGCTCTTCTCATCTGGGGCACCATGGTTTATGATAAATAAACGAAGAAAAATAAACCATCGTGGCCCAGATGTGAAGATCACCTCCAAAACCTCTTTCTCCCTCCACTTGAAGAACACCGTCCCTTCCTCCGTTCCCTCGTGC | |||||||||
gi|292503937|gb|GW721156.1|GW721156 WS02821.C21_B08 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02821_B08 5', mRNA sequence TCACATCTGGGCCACGATGGTT EST sequence (targeted fragment marked with yellow): TTAATTAAATTAATCCCCCCCCCCCCCGCTTGGCATTTTCCATTGCAATTTCTCCGCTTTCTCTAATCTCCTCCCTCGCAATTTTTGCGTTTATAGCGTCGACCTTTCTTTCCATTCTCTTCCTTCCTATTTCAATGTTCGAATTGGCAATGGCTGCATCCTCTTCCATTGCTGCCCATTACTCTTATGATGTCTTTATTAATCATAGAGGCCCTGATGTGAAGAAAACATTCGCCAGCCATCTCTACCGTGACCTTTCTAAATATGGATTGAAAGTCTTTCTCGATGACCCGGAAATGCAACCAGGAGACTCTTTGATTCGCCAAATAGAAGGCGCTGTTGGAACCGCCTCCGTCCATGTGGCGGTTTTCTCTTCCCGCTATGCAGAATCAAGGTGGTGTCTCGTTGAGCTCCTCCTCATGCTGAAGTCCGGGAAGACCATCATCCCGGTGTTTTACGATGTTAAGCCCGCCGACCTGCGGGCGGGGGGCAAGTACGCCGAAGAATTGGCAAAGAAGGGGACTTGTGGCGGTAAACGGAAGCGGTACGACTCGGACACTATTGAAGAATGGAGAAATGCTCTTTCTCACGTTGCAGGCATAAGCGGTTTTGAGCTGGAGAAGTGCAATGGGTAAGAACTCTACCTCCTCTCTCGGTAGTGTATAATTTTGTTGCATAGATATACATAGACATTTATTTCTCCCTAGTTTTATTTATTTTTCTTCTGAATAACCAGGAACGAGGGGGAGTTGGTAGAGAAGGTGGTTAGATGTGTATTGAAAAATATGGAAAAAAAAA | |||||||||