| mature miRNA: TCTTTCCTACTCCTCCCATTCC species: Picea sitchensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|218452865|gb|GH290602.1|GH290602 WS0474.C21_L07 SS-BD-32 Picea sitchensis cDNA clone WS0474_L07 5', mRNA sequence TCTTTCCTACTCCTCCCATTCC EST sequence (targeted fragment marked with yellow): GGGGAAAGAAAAAGGTAGGGTTTACCGTTCGCGGAACAACCGATGAGGTGAGGGTTAGCAGCTATGAGAATGGAGCAAAAGCTTTTGTTACGAGGATTGACATATTAAATAAGAGAATCGCATAGCCAGATGCAGCCGTCTGTCAAATATGGCTCTGATGTGATACGGGTGCTTCAAGAGCTCATTGATCATCAGAAAACAAAAAAAAATACAGTTCGAGTGGTCTATTTGGTTAAGGATTTTCAGATTGTGGGCATTGAAGATGACATTTATGTCATTACCGCATTTGCATGGATATCGCAATACGGCTTCGCTTTCCATAGTAGTTGTCGTTGTTGGGATGGGAGTAGTGGGGAAGAATCTCATGGTCGAAACTCTCCGGGAATGTTTCGACCATTTCATTTTGATGGCAGTGTGGCAGAAATTCGTGGGTGCCTCGCGTTGTTGATACTACTAAGGTGTTTACGCGGAGTGGGTTTGTTCTTACATACCAAAAAAACCCATTCGCTGATTCTCATATTATTAAGGATTAGTAGTGATTCAGAGCGTCGTTTTATGCCAAGATCAATGTTGTGTTCTGCTGTGCAATGCATCTTTTATGTGCCCAATGCCTAATGCATCTGATATGTGATCAAAGACTTTGCTCGATTAACC | |||||||||
gi|149976650|gb|ES876675.1|ES876675 WS02932.CR_H11 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02932_H11 3', mRNA sequence TCTTTCCTACTCCTCCCATTCC EST sequence (targeted fragment marked with yellow): AAAGTCAGAGAGAGGGCAGTAGCCAGATACCAAGTAGGTTTGGATGAAAAGGTGAAAGATTTTGAAAATAAAGTTTTTTTGGAAAATCATCAAAGTGCAAAACCTCAAGTCGTGGGGATTGTTGGGGTCGGCGGAGTAGGAAAGACAACCCTAGCGAAAGAACTCTTCGATCGGAAGAGGGTAGATTACAGTAAATTTTGTTTTTTATCTAATGTGAGAGAAAATGCAAGGAAAGGCTTTTTAAATTCTTTGCAAAGACAACTTCTTAAAAGCTTGACTGGAACGGATGTGCTAATAAACAGTATTCATGAAGGTATAGCAGCGCTTAAAAAACATCTCTCATCTGTTCGTGTCTTTGTAATTTTAGATGATGTAGATCACCTGAATCAGATTAATGCACTTTTTCCAGTTCGAACTGATCTCCTCTCAGATAGCTTAGTACTGATTACATCTAGAGATGAAAAGGTGATCAGAAGCTCAGGAGTTGAGAACGCATCAATTTATCAGTTAACTGGCCTTAATGATCAACACTCCCGAGAGCTTTTCTGCACCTATGCCTTCAACCGGCCCAATCGACCTCGAAGATTTAAATCTCTTGTAGATAACTTCTTAGAAGCCTGTGATGGATTGCCTTTATTTTTAAAGGTGTTTGGAGCACTTCTCTATGGTAAAGATGACAATATCTATGGGAAAGATGACAAATCTGATTTGGAAGACCTATTGGATAGACTTCCAGTACTTTCCGGTGAGACACAAGAAAAACTTCAAATTAGTTACCAGGGCCTCGATATGGAGCAACAGCAGATGTTCTTAGACACTGCATGTTTTTTCATAGGACAAAAGAGGGATACTGCCATAAGAATATGGGAT | |||||||||
gi|218445189|gb|GH281854.1|GH281854 WS0443.CR_E22 SS-BD-29 Picea sitchensis cDNA clone WS0443_E22 3', mRNA sequence TCTTTCCTACTCCTCCCATTCC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTAAGGATCGACTGCAAAATTTTTATTTTTCACAAAGTTCCTTACACGCCTTGACTGCACTTCATTGTGTGATGAAAATGAGATGAATTGAGCTTCCCACTTAGGTACCCTTCAATGTTTCCTACAGAACTGGTCATAGCTCCTTTTCTAGATCTGGCCATACCTCCACACCCAGACGCATGTCGCCCTCCATAAATAATCCGGGACAGAATGGTCATAGCTCCTTTTCTAGATTTGGCCATACTTCCACACCCAGACGCATGTCCCCTCCATAAATAATCCGGGACAGAATAATGGCTTTCGTTTTACCAGCATCTCAAGAAACTTCAACATAACTAATACAGCACCTGGGCCATGCGAGCAGATCTGAAGTGTAACAGTGAAGACAAAATAGGGATGTGTAGTGAAGGCCATAGGTCTCGGTGGAGTGGGGAAAACTGTAAGAGTTCATAAATCACATGGGATCATGAGTTACTGCCTGGTTTTTCCCTGCTCTCCGAGACCTAATGGCCTTAAAACTAAATGGCATCCCTGTACAACCCCCACAGAACAAAGCACGATGACTGGTTCTCCATATTCATCTTAATAATTTGCGTTGGGAAGGGATGTGTGGTGAAGCCAATAGGAATGGGAGGAGTAGGAAAGACTGATAATATTCAAAGCAGCAGTCTTATCCTCTGCTCCCACTCCTCAAGACTTCCATCCACAAAACACATCCATTCCCTTCTCACAACGAACCCCC | |||||||||
gi|49042106|gb|CO219791.1|CO219791 WS0107.B21_H14 SS-R-N-A-11 Picea sitchensis cDNA clone WS0107_H14 3', mRNA sequence TCTTTCCTACTCCTCCCATTCC EST sequence (targeted fragment marked with yellow): AAGATTTTCAAAATAAAGTTTTAGTGGAAAATCCTCAAGTCGTGGGGATTGTTGGGGTCGGCGGAGTAGGAAAGACAACACTAGCAAAAATACTCTTCGATCGGAAGAGGGTAGATTACAGTAAATTTTGTTTTTTATCTAATGTGAGAGAAAATGCAAGGAATTTAAATTCTTTGCAAAGACAACTTCTTAAAAGCTTGACTGGAACAGATATGCTAATAAACAGTATTGATGAAGGTATAGAAGCTCTTAAAAAACATCTCTCATCTGATCGTGTCTTTATAATTTTAGATGATGTAGATCAACTTAATCAGATTGATGCACTTTTGCCAGTTCGAACTGATCTCCTCTCAGGTAGCTTAGTACTGATTACATCTAGAGATGAAAAGGTGATCACAAGCTCAGGAGTTGAGAACGCATCAATTTATACGCTGACTGGACTTAATAAGCGGCAATCCCGAGAGCTTTTCTGCTCCTATGCCTTCAACCAGCCCTATCCACGTTCACGATTTAAATCTCTAGTAGATAACTTCTTAGAAGCCTGTGATCGATTGCCTTTATTATTAAAAGTGTTTGGGTCACTTCTCTCTCAGAAAAATGACCAATCTATTTGGAAAAACCAATTGGACAGTCTTAAAAAACTTTCCGAGCCAAAAAAAAAAAAAAAAAA | |||||||||