| mature miRNA: TGACAACGAGAGAGAGCACGC species: Picea sitchensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|166913849|gb|FD746273.1|FD746273 WS04231.C21_C03 SS-NE-27 Picea sitchensis cDNA clone WS04231_C03 3', mRNA sequence TGACAACGAGAGAGAGCACGC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTATGAGAAATTTGTTTTTATTCATACGAAGGGCGGATTTTTTTTTTGTCTATAACATAACATGAGACGAGCCTCACTCTGCTAATACTAGCTATGGTATTTAGCCTCTATATGTTTATTGAGTGCGATAGAATATATGTTCTTTGAAATACTTCAAAGACGTTTATTTGATGGAGATGAAGAGGCAGCAGCTAATTATTGTTAACATCTAACGTTGCTTCCTGGATCTACACCAAACTGACTGCAGTAATTATTGTAATAATTCACACGGTCAGTAACTGAGTCAGAGTCGCCACCATTGCATTCTCTCCCATTGATTGCTTGAATAGTTGCGCCGAATCCTTGCCCGGATGTAATAGCAGAGTGGCAATTGCTATTCAACATCCAAAACCAGACAGCAGTCTTCCATGAAATTGAATCATCCTGAGCTACAATCTCAGGGTTATTCAGCCCATCGAAAGCCAGGTAATTTCCGGCGGCACCATAATTATAATTCCATGTGAGCTGCAAGGGGCCACGCCCATAATATTGCTTTCCGGCTACGCAGGGATATTGTGTGTTGGTGGAATCACAGTAGTCGCTTTTGTTTATCTCCTCGACGTAGCACAAACTGCCGGTCTCGTGAGCAACGTTGGCGAAGAAAGCGGCGAGTTCTCTCTTGTTGTCGTCGGAGGTCCCGGTTGTGCCAAAGCCAGAAAATGCACGGGCCGCATTGATAAAGTCACTGTATGTATAGAAGTTCTTTCCTGTGCAGCTATCAGCAGCACCAGATATTAATCCATTGAAGAAATCTTGGGTAGCAATATCCCCAACGTCTCCGCGGCAGATAGAAATAACATAAAGCGCAAGAGCAAGCCATAGACTTAAAACGCTCTGGAGATGAGTTGCCATATTGGAGGCTAATATCTATCACTACTTTTGTTATCCTCGTGC | |||||||||
gi|218445657|gb|GH284831.1|GH284831 WS0454.C21_O20 SS-BD-N-30 Picea sitchensis cDNA clone WS0454_O20 5', mRNA sequence TGACAACGAGAGAGAGCACGC EST sequence (targeted fragment marked with yellow): GGGGGTAGACACAAATCTTCACAAAGTTCAAGCATTTACAATGATCATGAACAGAATTCGAACCCTAAATCAGATGTTATAAGGGGTGAGTCTTCAGAATTACTTACCAATAGTGTCAAGGACGAACCAAAGAATAAGTCTCAAAAGGATTACATCCACCTTAGATCAAGAAGAGGTCAGGCTACGAACAGTCATAGCCTCGCAGAAAGGGTCAGAAGGGAGAAGATAAGCGAGCGAATGAAAGTTTTACAGGACCTTGTTCCAGGCTGCAACAAAGTTACAGGTAAAGCACTTGTGCTGGAGAATATCATCAACTACGTGCAGTCCTTGCAGAGCCAAGTGGAGATTCTTTCAGTGAAGCTCACCTCTGTTCTTTCTCGTTGTCATTTTGATCTTCAAATCAACGGTCACCCGTCTAAAGAGCACTGGTCAAATGTAAGGGAGACAGAGGACTTTCATGGCAGCTTGATGCACTACAAACAGCATAAACAGTAGCGAATTATCTCTCTCTGTCATTCACAGCAGTGGAATTAATAGGTTCATCGAACTAGTCCAGAGCTATAATTATTTATGATACATGGCGGTTGACGTCGGTGAGAATCGAACGTTCTGTCGACTTCTATTATAGAAGCATATATTGAAAGGATCCCAGTGATTGAAATTTCTCTAATGATTTTCACCTTGAATTGAACTTTAAGAGTTCGTTGCAAGGCGTTGTGTTCCATATGTTCAAGCTTTTAATTTCAGTATGTTCCAGATTTTAAAAAAAACAAAAAAAAAAAAAAACAAAAAAAAAAAAAAA | |||||||||
gi|148812161|gb|ES663083.1|ES663083 WS03919.C21_N17 SS-B-24 Picea sitchensis cDNA clone WS03919_N17 3', mRNA sequence TGACAACGAGAGAGAGCACGC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTACAAGATTTCTGTTTGACCATTTCAATAACGATGGCTTCTAGTTGCATGGCAACGCAAATACAAGATTTCTGTTTGAATTCATGGAATTTTTTTATCAATGCAAATACAGGGTTTGCATTTTAATTCATGGAAATTTCTATCGTAGCCCATTAACAGTATCGGGTAACATAACAATTAGGGTTCTACATTGATTGGTAGAACAGATTCCCATATGCCGAACAATATTTGTGACGATCCATCGATTGGAGTTGAAGCCGCATCATAGCATCAAATAATCTGAAAACACTGTAGCAAAGTGTAATTATAACAGAAATAATTTTAGGGTATCGAAGAAAACCGACAGATTAACTATGAAAGAATTGAAATCGCAAGAGAAAATTTGGTTGAAGAGGAAACGAGATTACAGATCGAAAGTAGGAGTTGAGATGCAGTCGCTTTGCTGACTACAAGCAGAGAGCACGCATGGACGCCCACATATGCAAAATTCATATAAGAGAATACAGGCGTGCTCTCTCTCGTTGTCAGCAATGGAATAGAACGGATATTTTGGAGATACAGCATATCAAAACTGCAAATGGAAATTTTTGTAGTTCCTAGTTTCAAAAACCCTACAGAAAACATAAATAAGAACATTTTATCAATTCTCTGCAAGTTTCTGCAAGCAAATAAAACATTCATGATCAAAATTACCGGGATATCATATAAATTTTCTGAGCAATTCATCGTTAAGAAATTCACAGAGCATTTATGGAACAGACGCGCTTACCAGTCGTGATGGAGGTCTGGTCTGGT | |||||||||
gi|49041125|gb|CO218810.1|CO218810 WS0105.B21_D24 SS-R-N-A-11 Picea sitchensis cDNA clone WS0105_D24 3', mRNA sequence TGACAACGAGAGAGAGCACGC EST sequence (targeted fragment marked with yellow): AGCAACATAGAAAGCGAGGGCACCAACATGCCGGCTGACAAGCTCGGGGCTCAAATGTATCTCCATACTCATTAGATTCTCACATTCTCTCCATGGAAGAGTTCTGCACCAGCCTCACAAGTTTTTGATCGTCACAGCGGATCCATTAGGATTTTGTTTATGATCGAGAATGCTTTAGGCCTATATTGTGCCTCAGGAACACTATTTGGAATGTGAAGAGAAAACTGGGTTTTTGCACCGAGAGAAGCAAGGTGCTCTACAACCCTGGTGGGGTAGATCTCCATTGCTTCATGTGTGGCCAATGCCTAAACAAATGCCAATGTTAAATAAAATTGGCTTTCTAAGTGAGTGGTGAAATTCCTACAACTGGTGGAGTTTTGTCACAATTGGAAATCCCAATTAGTGCTTTCTCTTGTTGTCAAGGGACATAGTAAGAAAGGTTGACTTATTCGAAACAAGGAAGCTGAACCTCTATGATAACGGTGAGCTCACAACAAGGAAGCTGGATTTTGATGATATATATATTATATACAAGCATAGATCTAACTAAGCTTCGTGGGTTAGCTCAATCGGTTTGAACTGACCAGTTTCAAAGCAGAGATCTCTGATAGGTCATGTGTTCAAGTTCGGTGGAGTCCCTCTAGGTTAGGAGTACATGTTGTAAACCAGCGGAATTTACTCAAGTGCCATTCCCGGAATGTGAGGATGTGCCTAGAGGGTTTCCTTGAAGTTTTCCACGAAAAAAAAAAAAAAAAAA | |||||||||