| mature miRNA: ATGACAGAAGAGAGAGAGCAC species: Pinus banksiana database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|292545402|gb|GW761373.1|GW761373 PBA022.CR_N02 Pba02-Xylem-wounded-Norm (PBA02) Pinus banksiana cDNA clone PBA022_N02 3', mRN ATGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): ACGATTCTGTCAGCAGTGCAGCAGATTCCATGCCATATCGGAATTTGACGACGCAAAAAGGAGCTGCAGAAGGAGGTTGGCGGGGCACAATGAACGGCGGCGGAAGAATTCATTAGATTCATTGGCCAACTCCGGAAGCCAAGAAGAGAAACGTCTGATAGGTGTACTGGGTGAGAAATTTCCTATGGGGAGATATGCCCTGCCTTACCTGCCATCACCTGGGCGTGCTCTCTCTCTTCTGTCATCACAACAGCCATGGATGAATTCTGGTGCCTGTTCTCTCTCTGGAGACTTGTCTTCTCGATCCAGTGCAGCTCTGAGAGAACTTATTGCTGAGAATCGAGCTCAAAGCGTGTCTAGGTATTCCGAGGGTCAATATGATCAGAGAGATAGTCGCAGTGTTCGAATGCTACAACAACCAATACAAGAGCAACAAACACAGTCACAGGAGGAGATGGGAAACTGCAGGTTCATGCCAGGGTTACGTTCCCTTGAGAATAATGGGAAGGTTGAATATGTTGAAGAGGAGGTCAAGAAACATGGGGGAGCAATAGGTAGCCATGCAGTTGTTGTACGGCCCACACTTGATTTGATGCAGCAATCCAATTCTCTATTTGCATTGCAGTCTGGAAGAAACCGGTCATCGTCCTCCTCTTCAGAAGAAGAAGAATGTGAAATTTGGAAGTCTTTTGAAGGAACACACATCACATGATTACTCATCGATCCTTATTTAATAGACCTTGAATCTGTAAAGCCATGGCAAGAGATCTGCTATGCATGTTAGGCTGAAAAACTAGTGTAGAAAATTCTCTGTATATCTATTGTACTCAAGTGGGGAATAGATGAATTTTCTATTTATTTTCATGAATATATTTATCGTTTCTGAAAAAAAAAAAAAAAA | |||||||||
gi|292551556|gb|GW772350.1|GW772350 PBA0224.C21_A05 Pba02-Xylem-wounded-Norm (PBA02) Pinus banksiana cDNA clone PBA0224_A05 5', ATGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGGGACTGCTGGTATTTTGGCCGTGTTTGGAAGGGTGTTATTATCGTGTTTTAACACATAGGAGGCGGACGAGCATCAGGACAGATCACTGAGGGAGGGTTGTTGCAGAGCAATGGAGTTGCCGTCTGCAGTAGTTGTCCTGCCCATGGGAGCTCTCTTTCTTCTCTCAGGCCTTATAGTCAATTGTATTCAGGCTCTATGCTACGTCATTTTGCGGCCATTTTCAAAAAATCCTTATCGGATGGCTAATAGAGTTGTGGCAGAGTTACTTTGGGTGGAACTTGTTTGGTTGATCGACTGGTGGGCAGGTGTTAAGATACGCATATATGCGGATCCTGATATATTGCAGCATATGGGTAAAGAACATGCTCTTGTAATATCCAATCACCGCAGTGATGTTGACTGGCTTGTGGGATGGGTTTTAGCCCAGCGCTCTGGTTGCCTTGGTAGTGCTCTTGCAGTTATGAAAAAATCATCAAAGTTTCTTCCAGTAATGGGATGGTCTATGTGGTTTTCAGAGTATGTATTCCTTGAGAGAAATTGGGCCAAGGATGAGACCACATTGAAGTCAGGGTTAAAGAAGTTGAGAGATTTCCCTCGACCATTTTGGCTGGCACTTTTTGTAGAGGGCACACGCTTCACCAAAGCTAAGTTGCTTGCAGCTCAGGAGTATGCGGCATCTGTGGGCTTGCCAGTGCCACGGAATGTTTTGATTCCTCGCACCAAGGGTTTTGTCGCAGCTGTTAGCAACTTGCGCTCATTTGTTCCAGCCATATATGATGTTACTGTTGC | |||||||||
gi|292539248|gb|GW756365.1|GW756365 PBA021.C21_A03 Pba02-Xylem-wounded-Norm (PBA02) Pinus banksiana cDNA clone PBA021_A03 5', mR ATGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGGGGATTCACATTGCCTCTCCATCTCCTTCAATCAGGATTCCAGAATTGCCCGTCGAAATGGATGAAGTCCAAGTCAAGGTCGACATTCAGAGCACAAATGTCAGTGCCGACGAGCCAAGGCCTGCGAAGCGCCAGGGTTTCGAGCTCGCCAAGAGCCCTGAAAACGTGGCTTCGAAATCCACTGCGCTCTCCTCTCCGAAAAAACCCAAAGCTGCTTCTTCCTCTTCTTCTTCGTCGCCGAGAGCGCAGCCTCCCGCTTGCCAGGTGGAGAAATGCGCGGCGGATCTTGCTGATGCCAAAGAGTACTATAGGAGGCACAGGGTTTGCGAGCAACATTCAAAGGCTCGAATTGTGCTCGTTCTTGGCCTCCAGCAACGCTTCTGCCAGCAATGTAGCAGATTCCGTGTGTTAGAAGAGTTTGATGAAGCAAAAAGGAGTTGTAGGAGACGGCTGGCAGGCCACAACGAACGCCGTAGAAAGACTCCGTCTGATTCATCAGTTGACAGACTAGATTCAAATCATCATCTTAATGACAACTGGTTGAGACATATGAAGGAAACTGACAAGATGTCAATTGTACTAGAGCGGAACACTACGGCTAAAGTTTGCAAGGAGATAAAAAATCATTAGACTCTGGGCGTGCTCTCTCTCTTCTGTCATCCTCAGTTCAGCTCTCTTCGTGCAGAACAGACATGGCCAGAGTTATATTTACAATTCATCAAATTGAATTCTTGCTGTCGATCATGAACTGTAAATCTAAATATTTGAAA | |||||||||
gi|292522130|gb|GW740948.1|GW740948 PBA013.C21_C05 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA013_C05 5', mRN ATGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGGGGATAGCTTGTTTCTGTGACATAACAAGGCTTCTGCACCCCTTTTGCTCTTCTTCTTCTGTCATGGCTGCTGCAGATACAAATCCTTTCGTCATTCCAAACGGGGCCAAAGCGATTCCTGTGGAGAGTGTGCAGGAGCTTGTCAAAAAGCATGCCCACCAAGATGCTGCTGAATCTGTTCTCCGGCGTTACATCAGACCCCAGGAAGAGAGGCCCACGGTCTCATTACTTGCTTCTTCTGAATTCTCAATTCCTGTTATTGACATGAAGAAGCTAATCACCTTGCAGGGACAAGATGATCAGCGAAAACAAGAAATGGAGAGGCTTTCCAGTGCCTGCCAAGAATGGGGTTTCTTCCAGATCGTGAACCATGGGATACCTCATTCTTTAATAGATGAGATAAAGGCTGTAGCTAAGAATTTCTTCAACCTTCCTTTAGAAGAAAAGCAGAAATCCGCTCCGCAAGGGGGAGATCCTCAGGGATATGGTCAGCTGTTCGTGACATCTGAGGATCAAACGTTGGACTGGGGTGACTTGCTTGCTTTGTCACTGAAGCCCAACCAGATTAAAAATCTCGCCCTATGGCCAACTGTCCCCACAAATTTCAGGGATACGGTTGAGAGCTATGCAGTTGAGGTAGAAAGAGTCGCTCAAGAGGTGTTGAGTCTGTTCGCTGAANACCTGCATCTGGAAGATGCTGATTATTTCAAGAATGTGTTTGGCTCAGAGCCCATGAATTTGATGCGCATGAACTTCTACCCTGCTTGCCCTAGACCAGACCTTGTTCTCGGATTGA | |||||||||
gi|292542529|gb|GW760417.1|GW760417 PBA021.CR_A03 Pba02-Xylem-wounded-Norm (PBA02) Pinus banksiana cDNA clone PBA021_A03 3', mRN ATGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGGATTCACATTGCCTCTCCATCTCCTTCAATCAGGATTCCAGAATTGCCCGTCGAAATGGATGAAGTCCAAGTCAAGGTCGACATTCAGAGCACAAATGTCAGTGCCGACGAGCCAAGGCCTGCGAAGCGCCAGGGTTTCGAGCTCGCCAAGAGCCCTGAAAACGTGGCTTCGAAATCCACTGCGCTCTCCTCTCCGAAAAAACCCAAAGCTGCTTCTTCCTCTTCTTCTTCGTCGCCGAGAGCGCAGCCTCCCGCTTGCCAGGTGGAGAAATGCGCGGCGGATCTTGCTGATGCCAAAGAGTACTATAGGAGGCACAGGGTTTGCGAGCAACATTCAAAGGCTCGAATTGTGCTCGTTCTTGGCCTCCAGCAACGCTTCTGCCAGCAATGTAGCAGATTCCGTGTGTTAGAAGAGTTTGATGAAGCAAAAAGGAGTTGTAGGAGACGGCTGGCAGGCCACAACGAACGCCGTAGAAAGACTCCGTCTGATTCATCAGTTGACAGACTAGATTCAAATCATCATCTTAATGACAACTGGTTGAGACATATGAAGGAAACTGACAAGATGTCAATTGTACTAGAGCGGAACACTACGGCTAAAGTTTGCAAGGAGATAAAAAATCATTAGACTCTGGGCGTGCTCTCTCTCTTCTGTCATCCTCAGTTCAGCTCTCTTCGTGCAGAACAAACATGGCCAGAGTTATATTTACAATTCATCAAATTGAATTCTTGCTGTCGATCATGAACTGTAAATCTAAATATTTGAAATTTGGATTGTGTTGGTCCTAACTCTTACAACTTATGAAGTCCAGAATTTGAAAGTCTCATGACTTTTTTGAGCTTGTATGCTACACTAAAAAAAAAAAAAAAA | |||||||||
gi|292551056|gb|GW769330.1|GW769330 PBA0219.CR_J17 Pba02-Xylem-wounded-Norm (PBA02) Pinus banksiana cDNA clone PBA0219_J17 3', m ATGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): TTGGCTGCCATGATAAGCAGCACCTACAGTGTGAAGAAGCCTCTCAACGATTCAGTCTATGGTGCCCATGGTGAACTCATGGTGGCCATGAAATATGTGACTCTGTTAGTGTTTTTTCTGTTCTCTTTCTTCTGCCATTCTCTATCGGTTCGCTTCCTTAATCAAGTGAACTACCTAGTAAACACTGTGCAGTACTGTGGGTCGTCCTTAATAACCGCAGATTATGTCTCTGAATTGTTTGAGAAGGGCTCCATTTTCAACACTGTAGGGAACAGGATCTTTTATTTGGGTTTTCCTTTGATTCTTTGGGTATTTGGGCCAGTTCTGGTCTTTGTCTCTTCGATTGCAATATTGCCAATTCTGTACAATCTGGATTTTATCTTCGTTTGCAAGGCTCCCAGCAAAACTATGAGTGATCAGGTGGAACATCATCAAGAGAATAAGGAGCTGAGGATGGTATGAGATATAAAGCTTGGCTTCCACAAACAATGAAATGGAAGCTTCTCTGTATTAATGTTATGTAGTTAGAGCAACAGCAAAAAAATGTATTGGGTGGGTGAATATGTTGGCAATTTAAATAATTGCCAATCTATCCACTAATAACTAAGTACAAATTCTAAAGATTATTATCAGAAAAATATGGACTCTGCTCTATGTGGCAATAACCATTATAAGCAGGAATGGAAGGGGACGATAGTCTTCTCTATGTGGCAATAACCATTATAAGCAGGAATGGAAGGGGACGATAGTCTTTATGGTATCTGCCTGAAGAGGTCGATCAAGATCTAAGACAAAAGATGTAAACCTAAATACAGTGACTCATTGTGAAGATAGAGACTTGTACAACTCGAAAAAAAAAAAAAAAA | |||||||||
gi|292548546|gb|GW765343.1|GW765343 PBA0214.C21_G14 Pba02-Xylem-wounded-Norm (PBA02) Pinus banksiana cDNA clone PBA0214_G14 5', ATGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGGGGACTACTGCTGGTATTTTGGCCGTGTTTGGAAGGGTGTTATTATCGTGTTTTAACACATAGGAGGCGGACGAGCATCAGGACAGATCACTGAGGGAGGGTTGTTGCAGAGCAATGGAGTTGCCGTCTGCAGTAGGTGTCCTGCCCATGGGAGCTCTCTTTCTTCTCTCAGGCCTTATAGTCAATTGTATTCAGGCTCTATGCTACGTCATTTTGCGGCCATTTTCAAAAAATCTTTATCGGATGGCTAATAGAGTTGTGGCAGAGTTACTTTGGGTGGAACTTGTTTGGTTGATCGACTGGTGGGCAGGTGTTAAGATACGCATATACGCGGATCCTGATATATTGCAGCATATGGGTAAAGAACATGCTCTTGTAATATCCAATCACTGCAGTGATGTTGACTGGCTTGTGGGATGGGTTTTAGCCCAGCGCTCTGGTTGCCTTGGTAGTGCTCTTGCAGTTATGAAAAAATCATCAAAGTTTCTTCCAGTAATGGGATGGTCTATGTGGTTTTCAGAGTATGTATTCCTTGAGAGAAATTGGGCCAAGGATGAGACCACATTGAAGTCAGGGTTAAAGAAGTTGAGAGGTTTCCCTCGACCATTTTGGCTGGCACTTTTTGTAGAGGGCACACGCTTCACCAAAGCTAAGTTGCTTGCAGCTCAGGAGTATGCGGCATCTGTGGGCTTGCCAGTGCCACGGAATGTTTTGAT | |||||||||
gi|292532875|gb|GW754588.1|GW754588 PBA0124.C21_P15 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA0124_P15 5', m ATGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGGGGATAGCTTGTTTCTGTGACATAACAAGGCTTCTGCACCCCTTTTGCTCTTCTTCTTCTGTCATGGCTGCTGTAGATACAAATCCTTTCGTCATTCCAAACGGGGCCAAAGCGATTCCTGTGGAGAGTGTGCAGGAGCTTGTCAAAAAGCATGCCCACCAAGATGCTGCTGAATCTGTTCTCCGGCGTTACATCAGACCCCAGGAAGAGAGGCCCACGGTCTCATTACTTGCTTCTTCTGAATTCTCAATTCCAGTTATTGACATGAAGAAGCTAATCACCTTGCAGGGACAAGATGATCAGCGAAAACAAGAAATGGAGAGGCTCTCCAATGCCTGCCAAGAATGGGGTTTCTTCCAGATCGTGAACCATGGGATATCTCATTCTTTAATAGATGAGATAAAGGCTGTAGCTAAGAATTTCTTCAACCTTCCTTTAGAAGAAAAGCAGAAATCCGCTCCGCAAGGGGGAGATCCTCAGGGCTATGGTCAGCTGTTCGTGACATCTGAGGATCAAACGTTGGACTGGGGTGACTTGCTTGCTTTGTCACTGAAGCCCAACCAGATTAAAAATCTCGCCATATGGCCAACTGTCCCCACAAATTTCAGGGATACGGTTGAGAGCTATGCAGTTGAGGTAGAAAGAGTCGCTCAAGAGGTGTTGAGTCTGTTCGCTGAAAACCTGCATCTGGAAGATGCTGATTATTTCAAGAATGTGTTTGGCTCAGAGCCCATGAATTTGATGCGCATGAACTTCTACCCTGCTTGCC | |||||||||