| mature miRNA: TCTTCCCTATTCCTCCCATT species: Pinus contorta database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|262131723|gb|GT247512.1|GT247512 PCO0111.C21_B04 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO0111_B04 5', mR TCTTCCCTATTCCTCCCATT EST sequence (targeted fragment marked with yellow): GGGGGTGTAGAGACGCAGGAACAGTTTAGAAACTCTGGAGATTTTGCAGCGAAAGGCCATGGCGATTTTTCGTGGCTTAGGGTTTTTATTTGTTTTCGCTGTACTCTCAGGCCAAGCAATAGGTGCCCCGAAAAAACCCATTGCAGTCGCTCGCAGAGAAGACATTCCTTACATTAAATGTGGAGTCTGCGAACAGATTGTCAAACAACTCGACCGTCAAGTGACGAACAAACGCAATCAGATCGCCCCCAAGCTGCTCTCAGAATACGAGATTATTGAAGTAGCAGAAAATATTTGTAATCTGAAGAAGGAGGAGGGTGATTGGTTGCTTCATCTTGATATTGTGGAAGATGGGGACAAATTGAAGCTTGTTGAACAAGAGCAAGAGGGAGATTGTAATGCAGAGTGCAGGACCATAGAACGAACTTGCCAAGAGGTGATTGGATATCACGATACTGATGTTGCAGAATATTTATTTAAAAGCAAGGCTCAAAGTTCTGCGTTATTGAAGTTTCTTTGTAATGACCTCAGTAAAGCTTGTTCAGTCAAGCCACCCCCAGTTCCAAAGGATAGAGCACCAGGGGAGCCTTTTGTACCAAAGTCATCCAAAGAGGCTGAGATGGAAAAGATCATGAGATCTATGTCTGGCATGCCTGGAGCACCGAATATGAAAATGTACTCTAAGGATGACCTGATGAATATGCCAAATTTTGGGAGCAATGGGGAAGATGAGGATGATGA | |||||||||
gi|262135586|gb|GT248865.1|GT248865 PCO0112.CR_P04 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO0112_P04 3', mRN TCTTCCCTATTCCTCCCATT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTGTCTGAACTTGAGATCTGTTATTAGTAATTTCAACAGCTTAATATGATAGGTTGAGACCTTAAAATAAAGGTTCTTACATACCATAATCCTCTCTAAACAGGCATCTCTACTATCAAACTATTCATACAATCAAATTGACTTCTCTACAATTATTACATGGTACTCTAAGAAAGGAAACACAAAACTAATGCTGGTTCTAACATCCAAGCCATACACCCAAATCCAGAACTAATTCTTGTTCTAACATCCAAGCCATACACCCAAATCTAGATCTTGGTCACAGTATAATAAGCTCCATGTCCCCTGCAAAAATAAATAAATTCACGACATAAAGCAGGGACAGGCTTACAATCAACTGTATGTTGCAGCCATGACCCTGATCAAGGGAAGCCATAATTAACTGTGGAGTCAAGAAATAAAAAGGAAAAACTTGTTCAAAATAATAACCTAACCAACAACAAACCTGTGCCATGTTTGCAGATCTGGAGAGTAACAGCGCCAAAGTTAATAGAGCGGGCACAAAAGGGATGTGTAGTGAAGAAGGTCATGGGTCTCGGTGGAGTTGGGAAGACTGTTACAGTGCATAGATGTCATCAGATCATAAATTACTGCGTAGGTATTTCCAACCCACAGAGACCTGATGGCCTTAAAACTACAGGACATCACCATAATACCCACAAACCGGAATGATATTTAGCCATATTCGTTTCTTTAACAGGCTGCGTACTGTGTTACATTGTGAAGGGAGGCAATAGGAATGGGAGGAATAGGGAAGACTGATGAGATTATGACTGAGACCTCACCACAGAGCCTTCTCCTACCCTCCCACTCCTCAAGACTTCCATCCACATG | |||||||||