| mature miRNA: AGCTCTGATACCATGTTGAAG species: Pinus pinaster database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|113714460|gb|CT580599.1|CT580599 CT580599 LG0ACA Pinus pinaster cDNA, mRNA sequence AGCTCTGATACCATGTTGAAG EST sequence (targeted fragment marked with yellow): AATTCGGCACGAGGTTTTAATATCAATGAAGCTCTATTAAAAAAGAGTCAAGATCCTTGTTACGCATAGTAAACGAAGATGACAACTGAGAACACCTTCAAATATCAATGAAGCTCACCATCAGCTACTTGAAAAAGTCAAGAGTTCGTTAAGCAAAACATAATAAACAAAGATGAAGACTGTCCAATATCAATGACGCTTCCCAAGTTCAATGAATCCCAAGCAAATGAGCCCATACAAAATACATCTTCAACATTGTATCAGCGCCATCCTTTGGAAAGCCATCTAACGTGGTAAATAAGAAGGCATTCCAGCCAAAGAACCACCGCCCGACTGCGACGTTCTAGGCAATGGAGACTGCCCGAGCTGGGAACTCTGATATGCATTCAAACCTTGTAGAGCAGCTGCCTGGGACCCATAGACCCCAAGAACACCTGGATTAACACTGCCAACACCACCATGCTGAGACCCATAAGCCCCCAAGCTCGGGTGCACTCCATAAGACCCTACCGATCCAAGCGAGCTCTGAACAGATGGCGAAAACGCAGCCGCTTGGGACAGTGAAGATGGATTGAATGACGATGCCAAAGCAGGATTAACAGACGTAAAAAGCGAGTGATTCAATCCAGGAAAGTTCTGGTTCTGACCAGCCAAAATAGCATT | |||||||||
gi|90038705|gb|CT580035.1|CT580035 CT580035 LG0ACA Pinus pinaster cDNA, mRNA sequence AGCTCTGATACCATGTTGAAG EST sequence (targeted fragment marked with yellow): AATTCGGCACGAGGGACAAACTTTCCCATGGTATCAGAGAAACTTCCACATGGTATCAGAGCTTGGACCCGGGTTTGATTCCCCCAGTTATGTTTGAAGGGGTGCTGGAAAATTTATGGCACCTCTATAGAATCTGTAATCCAAACACTGGGGATCCTAGTCACTGGTTTGGAATGTTTACCAACACCCGCTGGTTTTGGTGTAACGGCAAACCTCAACACAGTGTACTCACAGTCACTCTGGGACCAGTGAAAACATAATGATTTAGAAGTTTAAAAACCCTTTTGATGTAACGGAAAACCTAACAATATGTGAGGGCCAAATTTCCCCACTTCAGACCACCCTGCTTAATTTTTACTTATTACTATTTATGTACCATTTTTATTTTTATGTTTACCTGTCAAATACGTTTTAACCACAAAAAAAAATATTCTAGCCCTGGCGGTTATATATTTCTATCACATTCTCACCATCAATGGCATTCAAAAGTCTCAGTTCTCTTTGCAGATTACATGTACACGATTCATATGAACTGTTGAGTTGTTCATCTGAGAGTTGCAACCTGCACTACCTTGGCATAAAGCACGAGATCACATCACACCAAATGAAGCAAACGAACAGAACAGTTTGCGTGACGGGAGCAGGGGGGTTCATTGCCTCTTGGCTTGTCAAGACGCTCC | |||||||||
gi|28518500|gb|BX252830.1|BX252830 BX252830 Pinus pinaster differenciating xylem adult Pinus pinaster cDNA clone PP071D06, mRNA AGCTCTGATACCATGTTGAAG EST sequence (targeted fragment marked with yellow): TGAGGTAGCTATTGGTGATCCGCACCCGTGAGCTCCACTTATTTTGGTTTACCATTTCATGTCTTCCCTATAAAACCCTTGACATGGTATCAGAGCTACAAGGCTGTCGATCCTGTACACTGAGTGAAGGGTGTGACTGAGGCAAAATCATCGTGTAGTTTGGGTGGAAAAACGCGACGATCGCACTGTAACACTTCACACGGGTATCATTGTAAAAACTCGGCATGAGCTTGGGTGGAACGTCGCGACTTCGTGTTGAATAGATGCGATGAACTTTGCGAATCCTTGGTGGATAAGCGCACTGACCTTGAGGTTCAAACGACAGAATCGTAGCAGTGGAGTGCTGCTGCTGCATCTGCGTGTAGGAGAACTTCGTGAGAGCTACACTTGACTTGTAGCTGGAGAGCTGCCGGTGTTGGATGCCGAGGAGACACGAGGAGGCCAGATTTATTTGAGCACGCCGTGGTGAAGGAAAAAAGAGCTGCGTGTTTTTTTTCTCTTGTGGTGGGCAGTGAATCAGGCCCAAAGGCTGCGGTTTTCGGTGAACAAAAAAAACTGCATGTTTTTTTTTTTGGTGCTCTGCGATCTGAG | |||||||||