| mature miRNA: AACAGAGCATGCCGTTGGTT species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|74157634|gb|DT627566.1|DT627566 EST1156315 Subtracted pine embryo library, Lib_B Pinus taeda cDNA clone PIMCO06 5' end, mRNA AACAGAGCATGCCGTTGGTT EST sequence (targeted fragment marked with yellow): ACTGAAATCATCAAGCACTGAAACCTCTATGAAGTGAAGCCCTAAACCGGGATGGCATTTGATTACATGCCTCTGCAGATACCGCAGTCATGGTATTCTTAGTGACTCCTTCATTGCACATATTTGCAAGAGAACGCATGTGTTTCATGCCATACTGCGACAGACCCGCGTACGTTGGAAGGAATTGGGGATACTTGTGTCTGTATGGATTGCATTCTTGGTATTGCAGATTTTCAAGACCTAATCAACAACATGCTCTGTAGAATACTGGGCGCTAAACCTACTACAGATCCCTGTTGCTATGTCTGTAAGCCTTTATGAAGCTGTAGGCTTATATAGAGGAACAAAATCAGTTGCTTCTAAAGGAGAAGCAGGAATTAATTGGAAAATATCTCAGCTGCTTCTATATTTCTTTTGTGGAATCCTGGCTGGGGTTGTAGGTGGCCTACTTGGGCTTGGGGGAGGATTCATCCTGGGACCTCTACTTCTGGAGCTGGGTGTTCCACCTCAGGTTTCAAGTGCCACAGCTACCTTTGTTATGACATTTTCTTCATCGATGTCTGTTGTGGAATACTATTTTCTAAAGCGATTTCCAGTTCCCTATGCTGCATACCTCTTTGGGGTCTGTGTCATTGCAGCCTTTATGGGCCAACATGTGATTCGAAGACTTGTCATTTTGTTGGGGAGAGCATCCTTGATCATTTTTATTCTGGCTTTTGTGATCTTCTTAAGTGCTCTTACATTAGGTGGAGTAGGTATCGTTAAAATGATTCACGAAATTGAGGATGGAGACTACATGGGCTTTGAGAGCCTTTGCAGTTATACTGCATGATCCTTTGTTTCTCACGATTGCTTCTGATAATTCATTTCGATTACCAAGGGATTGGCAGTCGGAGAGCAGCATTTGTGATGTGTAGCTCCTCAAAGTAATCTTTTTATGGGAGTTGCAATAGTTGATCAGG | |||||||||
gi|57881424|gb|CX646595.1|CX646595 COLD1_10_G05.b1_A029 Root cold Pinus taeda cDNA clone COLD1_10_G05_A029 3', mRNA sequence AACAGAGCATGCCGTTGGTT EST sequence (targeted fragment marked with yellow): TCTGCTTTGAATCACGCAAGCGTTTAGTCTCTTCACTTGTTTGAATATAAAGGTCGGCTCGATTTCTCTTTCTCTGCAACGAAACCACAAATTTTGGCATAATGGCACTGACTCCTTTCTTCGGTCGATCAACAGCCGGTAGCCTGTGGGATCCATGGGACCGCAGCAGCAGCCTATTTGATCCGTTCGTTCCCGTTTCTCGAATTTGGGACGCCTTTGATTTTGGCAGTGCGCTGGACACATCGGCCTTTTCTTTCTCCCGGGATGCGCAGGCCATCGCCAACACGAGGCTTGACTGGAAGGAAACCCCCGAAGCTCATTTCTTCACCGCAGATGTGCCTGGTAAGTTGTGCTTATCTTTTCTTTAATTTGCCGTGCTTTTCGATTTGCAGTCCAGTCCATCGATTGAATAACGGCAGGCTCTGTTGAATGTGCATGGGTTGAAGAAAGAAGAAGTAAAGATCGAACTGGTAGATAACGGCAGTTTGCGAATTAGTGGGGAAAGACACAAGGAAGATGTCCAAGAGACGGACCAGTGGCACCGGGTGGAGCGGTCAAGTGGGATATTCAGGAGACAATTCCGGCTGCCGGAAAATGTAAATGCAGACGGCATATCTGCTAAATTGGAGAACGGCGTCCTGAGCGTCAAAGTCCCCAAGATTAAGCCAGACGCCGCTTCAGGTAGCGATGTGAAAAGTATTGATATTTCTGCAAGTGAGAAGTGAGGGCGAGGGTTTCGTAGTGTATGGTTTTTACATGTACAGACCCTTAGAATGATAAATAGGCCCTCTAAAATGAGGGTGAGGGTTTCTTAGTTTTGAAGTTTTGCAGTTGTAAAAGCTTGGAAAGATAGTTTAGGCAATACTCTGGTTCCATGTAGTGTATTTTCTGTCA | |||||||||
gi|49448668|gb|CO367351.1|CO367351 RTK1_33_F10.g1_A029 Roots minus potassium Pinus taeda cDNA clone RTK1_33_F10_A029 5', mRNA se AACAGAGCATGCCGTTGGTT EST sequence (targeted fragment marked with yellow): CTCTTCCTTGTTGAATCTAAGATCGGCTCGATTTCTCTTTCTCTGTAACGATACCAGAAATTTTGGCAGAATGGCACTGACTCCTTTCTTCGGTCGATCAACAGCCGGTAGCCTGTGGGATCCATGGGACCGCAGCAGCAGCCTATTTGATCCGTTCGTTCCCGTGTCTCGAATTTGGGACGCCTTTGATTTCGGCAGTGCGCTGGATACACCGGCCTTTTCTTTCTCCCGAGATGCGCAGGCCATCGCAAACACGAGGCTCGACTGGAAGGAAACCCCCGAAGCTCATTTCTTCACCGCAGATGTGCCCGGTAAGTCGTGCTTTTCTTTTGTTTAATTTGCCGTGCTTTTGGATTTGCAGTCCAGTCCATCGATTGAATAACGGAAGGCTCTGTTGAATGTTCCCGGTAAGATGTGCTTTTCTTTTCTTTTATTTGCCCTGCTTTTCGATTTGCTGTCCATCAATTGAATAACGGCATGCTCTGTTTAATCTTTTGCAGGGTTGAAGAAAGAAGAAGTAAAGATCGAACTGGTAGATAACGGCAGTTTGCGAATTAGTGGGGAAAGACACAAAGAAGATGTCCAAGAGACGGACCAGTGGCATCGGGTGGAGCGGTCAAGCGGGATATTCAGGAGACAATTCCGGCTGCCGGAAAATGTAAATGCTGACGGCATATCTGCCAAATTGGAGAACGGTGTCCTGACCGTCAAAGCCCCCAAGATTAAGCCAGATGCCGCTTCTGGTAGCGATGTGAAAAGTATTGATATTTCTGCAAGTGAGAAGTGAGGGCGAGGGTTTCGTAGTGTATGGCTTTTAC | |||||||||
gi|68023976|gb|DR165654.1|DR165654 RTPHOS1_6_B02.g1_A029 Roots minus phosphorous Pinus taeda cDNA clone RTPHOS1_6_B02_A029 5', m AACAGAGCATGCCGTTGGTT EST sequence (targeted fragment marked with yellow): AGATCTCCTCGATTTCTCTTTCTCATAATGGCACTCACTCCTTTCTTCGGTCGATCAACAGCCGGTAGCCTGTGGGATCCATGGGACCGCAGCAGCAGCCTACTTGATCCCTTCGTTCCCGTGTCTCGAATTTGGGACGCCTTTGATTTCGGCAGTGCGCTGGACGCACCGGCCTTTTCTTTCTCCCGGGATGCGCAGGCCATCGCCAACACTAGGCTTGACTGGAAGGAAACCCCCGAAGCTCATCTTTTCACCGCAGATGTGCCCGGTAAGTAGTGCTTTTAATTTCTTTAATTTGCCCTGCTTTTCGATTGGCAGTCTATCAAATGAATGACGGCAGGCTCTGTTTAATATTTGCAGGGCTGAAGAAAGAAGAATTAAAGATCGAACTGGTAGACAACGGCAGTTTGCGAATTAGTGGGGAAAGACACAAGGAAGATGTCCAAGAGACGGACCAGTGGCACCGGGTGGAGCGGTCAAGCGGGATGTTCAGGAGACAATTCCGGCTGCCGGAAAATGTAAATGCAGACGGCATATCTGCTAAATTGGAGAACGGCGTCCTGACCGTCAAAGCCCCCAAGATTAAGGCAGACGCCGCTTCTGGTAGCGATGTCAAAAGTATTGATATTTCTGCAAGTGAGAAGTGAGGGCGATGGTTTCGTAGTGTATGGCTTTTACAAGTTCACACGCTTAGAATGATAATTAGGCCCTCTCCAATGAGGGTTAGGGTTTATAATGAGGGTTTCCTAATGTAGAAGTTTTGCAGTAGTAAAAGCTTGAGGATGAGGGTTTACAATGAGGGTTTACTAGTGTAGAAGTTTTGCAGTTGTAAAAGCTTGGAAAGATAATTAGGCCATACTCTGGTTTCATGGAGTGTACTTTCTGACACCTGTTA | |||||||||
gi|67047194|gb|DR069506.1|DR069506 RTDK1_7_D11.g1_A029 Roots, dark Pinus taeda cDNA clone RTDK1_7_D11_A029 5', mRNA sequence AACAGAGCATGCCGTTGGTT EST sequence (targeted fragment marked with yellow): GGTTAAAACCTGTTAATTTTGTAGATTCCAGCAGAAATTCTAGTACTACTGGTGTTCACATGGCATCAAAATTTTGTAAAAATATCCACAGTGAGGACCTTAAGGTGATGGTGCTTGCAGATTGTTTATTCCTGGAGCTAGACAATGTTACAAAAACTGCACGTTCTCCATGTAAGAATGTTCTCCGAGTAAGAGAACTATAGCAAAGCATTCAAAGAAAAGCTGCTGGCATCCATATATCAAAGAATGTATTGATAACTCTAGAAAGTATTATAAAACTGACAAAAGAACAACTGCCACAGCCCCAGCAACAGAAATGAGAGAATATAGGTAACTATTCATAGTATTGCTTGCTGCACTAACTGCTATTTGGATCTCAAATTTACAGGTCCCTTGTGATGGGTCACTCTCAGTTACGATGGCCAAACTAGAAAACCCACAATCACCATTCTGCTGATTGTTCACCTGATAGTATGAGTTAAATGCATATGATGCATTGCCTTGATAATCCAAGCTGTTGCATGATGATCCAAATCCCAAAGAAGTGCAATCACCATGTGTACAAGCATAGGTAACACTATCAGGTAACTGAGTCAACACTGAAGGGCTTGCACTCGGATTGAACACACACCATCTTCTAGGCAAATATTTAACACCCTTGGCAGAAACCAGTGCCATGTTCTGTGTTTGCCCTGACAGATCAAGTGCATATTTGGGTGTCCCATCGTACTGGAAAATGCCCCAATGCCTTTCAAAGTTACCTGGTGCTATACTTTTTGCATCTTCATCAACAAGACTAAATAGATA | |||||||||
gi|70780799|gb|DR690447.1|DR690447 EST1080533 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWACV17 3' end, mRNA AACAGAGCATGCCGTTGGTT EST sequence (targeted fragment marked with yellow): TTATAATCTTAAGCTAAAGCATCCAACATTAGACTTGCCTATCATTGATTATGATCTGGCCATGCTCTTTCAACCCATGCTTATGTTGGGAATTAGCATTGGAGTTGCTTTCAATGTTATTTTTGCGGACTGGATGGTGACCATTTTGCTTATCATCTTATTCCTAGGTACATCTACCAAAGCATTTTTAAAAGGAGTAGAAACATGGAAACAAGAAACTATTCTAAAAAAAGGAAGCAGAAAGGGTGCGTGTAGAGAATGTTACAACTGATGTGGAACCAGAAGAACATCAGGAAGTAGATTTCAGGCCTCTGCCTAGTGAACCTGTGCCAAATGAGGAGAGTAACGGTAATAATGAGGGGAGTAGTAATGTACGGCTGCCAAGGGATGTTACGAACACAATTTGGATAAATGTACGTTGGAAGGAGTTGGGGATACTTGTGTCTGTATGGATTGCATTCTTGGTATTGCAGATTTTCAAGACCAAATCAACAACATGCTCTGTAGAATACTGGGCGCTAAACCTACTACAGATCCCTGTTGCTATGTCTGTAAGCCTTTATGAAGCTGTAGGCTTATATAGAGGAACAAAATCAGTTGCCTCTAAAGGAGAAGCAGGAATTAATTGGAAAATATCTCAGCTGCTTCTATATTTCTTTTGTGGAATCCTGGCTGGGGTTGTAGGTGGCCTACTTGGGCTTGGAGGAGGATTCATCCTGAGACCTCTACTTCTGGAGCTGGGTGTTCCACC | |||||||||
gi|51495922|gb|CV033095.1|CV033095 RTNACL1_20_F06.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone RTNACL1_20_F06_A029 3', m AACAGAGCATGCCGTTGGTT EST sequence (targeted fragment marked with yellow): TCTTCTGCACTTTAGTCTCTTCACTTGTTTGAATCTAAAGATCTCCTCGATTTCTCTTTCTCATAATGGCACTCACTCCTTTCTTCGGTCGATCAACAGCCGGTAGCCTGTGGGATCCATGGGACCGCAGCAGCAGCCTATTTGATCCCTTCGGTCCCGTGTCTCGAATTTGGGACGCCTTTGATTTCGGCAGTGCGCTGGACGCACCGGCCCTTTCTTTCTCCCGGGATGCGGCAGGCCATCGCCAACACTAGGCTTGACTGGAAGGAAACCCCCGAAGCTCATCTTTTCACCGCAGATGTGCCCGGGCAGTAGTGCTTTTAATTTCTTTAAGTTGCCCTGCTTTTCGATTGGCAGTCTATCAAATGAATAACGGCAGGCTCTGTTTAATATTTGCAGGGCTGAAGAAAGAAGAATTAAAGATCGAACTGGTAGACAACGGCCGTTTGCGAATTAGTGGGGAAAGACACAAGGAAGATGTCCAAGAGACGGACCAGTGGCACCGGGTGGAGCGGTCAAGCGGGATATTCAGGAGACAATTCCGGCTGCCGGAAAATGTAAATGCAGACGGCATATCTGCTAAATTGGAGAACGGCGTCCTGACCGTCAAAGCCCCCAAGATTAAGGCAGACGCCGTTTCCGGTAGCGATGTCAAAAGTATTGATATTTCTGCAAGTGAGAAGTGAGGTCGATGGTTTCGTAGTGTATGGCTTTTACAAGTTCACACGCTTAGAATGATAATTAGCCGCTCTC | |||||||||
gi|48929978|gb|CO159437.1|CO159437 FLD1_13_C11.g1_A029 Root flooded Pinus taeda cDNA clone FLD1_13_C11_A029 5', mRNA sequence AACAGAGCATGCCGTTGGTT EST sequence (targeted fragment marked with yellow): GTGGCGTGAGAACCCTATCCTCAATATTGGATGAAGCTGCTGAACCTCCCATCATAAACCCCTCTAACCCCAGCAAAGGCCGAGCACATACCGTCAGTGCTGAGAGCCTGAAAGCCCTTATTGGATACCAAAGCCCCCGTCAAAAACAATGGCATCCTCTGTTACGGTCTCCAACTCCCTGTCCGTCATTGGCGGTCGCCCCTCGGTCCCTTCGGCCCGTCACGATGTCTTCCCGGCGGCTGTTACTCTCGCCTTCCCTTCCTCGCTCTTCCGCTCCCTCTCGCTCTCTGTCTCGTCCTCGGCGTCATGGCCACCGGTGGCCGCAGCGTCAATCAGAAAGCGGGGTGGCGTCAAGAGGGCGCCCGTCATGGCAAACGCCTCGGAGTGGGAGCAAGATGTAGGGGTCAAGACACAAGAAGGAGAAGAAGAAGAAGGGGAAACTGTGGCAGGTGAAATCGATTTTGTTAATGAATTTGTGGAGCTTCCAGAGGGGACGAAGCTGTTTGTGGGGAATTTGCCCTTCAACTTAGACAACCAGCAACTTGGCGAGCTCTTTGAAGGCGCTGGAGAAGTCTTGGATGTCAATATCATTACGGACAGAGAAACTGGAAACTCTCGTGGCTTTGGTTTTGTGACCATGGCCACTGTTGAAGAGGCAGAGAAAGGGGTTGAGCTTTTCAATAGATATAGCTTAGAGGGCAGACTCTTGACAGTCAATAAGGCTGCTCCTCGAGGAACCAAATTTGAAAGGCCCGCTCAACCTGCCTCTGGCAGCAAAATTTATGTTGGGAATTTGCCATGGCAGGCTGATGATAATAGCTTGTTGCAATTATTCAGCGAACATGGAA | |||||||||
gi|13068648|gb|BG275387.1|BG275387 NXSI_141_C05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA clone NXSI_141_C05 5' sim AACAGAGCATGCCGTTGGTT EST sequence (targeted fragment marked with yellow): AAGGCAAATGAAGGGCATCTTTAAAAACTGAGCAGAGGTTGCAGGGTTAGCAGTAGGTGACTCCAAGAGAGCCTTTCCTCTGCTAGTTTCCATGGCGGTTTCAGTTGAAAGTGTGAAGAAGCTCATTGCAGCGTGTCTCCTGCTACTGGTTATATGTCAAGTGTCTGCAGAGTATGCCACTGCTGGGAATTTAACGTTCTCTGGGCTTGAAGCACCTGGTATATACCGCAGGCTTCTCCCAGCAATAGACTGTAAAGGTGCATGTGAGGAAAGGTGCAAACTGAACTCACGGCATGGTCTGTGTACGAGAGCATGTGGGACGTGCTGTCAGCGGTGCAACTGTGTGCCACCTGGACAAAGTGGGAATCGAGAGCTTTGCGGTGCCTGCTACGCCAACATGACCACTCATCACAACAGAACCAAGTGTCCTTAATTAAAATATCTCAAAGAATCTCAATGCTGTTGTGTATATTTTGGAGAAAATANNNNNNNNNNNNGGTCCCGGACNNTGNNNNNGTACATAT | |||||||||