| mature miRNA: CGTGTTCCCAGGTCGCCCCGG species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|11127293|gb|BF221161.1|BF221161 NXCI_164_B10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda cDNA clone NXCI_164_B10 CGTGTTCCCAGGTCGCCCCGG EST sequence (targeted fragment marked with yellow): CGCATATCGGGCTCATATGAATAAATGAAAGAGAGTAGGCTCGACTGGGGTGACCTTGGAACACATTCACATTCACAGGACTCATGGAGAAATCAAGAGATTACATTAATGTNNACGTGTTCCCAGGTCGCCCCGGTGGAAACCTCCTCTGCTACTGCTGCTGTTAATGGTGTCCTCTGCTTCAGCACACTTCTTATTTCACCCAATATACTCAAAGGGGAGCAAATGTGGTTTATGANNAACAACTATGGGTATTTTTATATATCTTGGNNTATGATTGTCGGATTCCAATTTATCCTCAGAATCTGCAATCAAGATTAATNCNGCAAGNAATCACATATTCTGAGTAATGTTTTGTTTGGCGCTATTATATGTTATGTNNAATGTGCATTTAATGGCGACCTNGNNNNTC | |||||||||
gi|11127286|gb|BF221154.1|BF221154 NXCI_164_A10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda cDNA clone NXCI_164_A10 CGTGTTCCCAGGTCGCCCCGG EST sequence (targeted fragment marked with yellow): ATATCAGGCTCANNTGAACAAATGAAAGAGAGTNNGCTCGACTGGGGTGACCTTGGAACACATTCACATTCACAGGACTCATGNNNNAATCAAGAGATTACATTAATGTAGACGTGTTCCCATGTCGCCCCGGTGGAAACCTCCTCTGCTACTGCTGCTGTTAATGGTGTCCTCTGCTTCAGCACACTTCTTATTTCACCCNNTATACTCAAAGGGGAGCAAATGTGGTTTATGATCAACAACTATGGGTATTTTTATATATCTTGGAATATGATTGTCNNATTCCAATTTATCCTCAGAATCTGC | |||||||||
gi|66971795|gb|DR048228.1|DR048228 RTBOR1_7_H12.b2_A029 Roots plus added boron Pinus taeda cDNA clone RTBOR1_7_H12_A029 3', mRNA CGTGTTCCCAGGTCGCCCCGG EST sequence (targeted fragment marked with yellow): AGCAACAAACAGATTATTACATCACGGATTATGCAANGTTGTGACATACACATTTTATGTATCAAACAAAAGACAATAATTTTACAAATGAGGGCCAAGGTCGCCATTAAATGCACATTCTACATAACATATAATAGCGCCAAACAAAACATTACTCAGAATATGTGATTCCTTGCTGAATTAATCTTGATTGCAGATTCTGAGGATAAATTGGAATCCGACAATCATATTCCAAGATATATAAAAATACCCATAGTTGTTGATCATAAACCACATTTGCTCCCCTTTGAGTATATTGGGTGAAATAAGAAGTGTGCTGAAGCAGAGGACACCATTAACAGCAGCAGTAGCAGAGGAGGTTTCCACCGGGGCGACCTGGGAACACGTCTACATTAATGTAATCTCTTATTTCTCGTTTCAAAAAGCTCAAAGGTTGAATTTGATGTGTTTCCTCCCAGCTTTATTAAGACCACAGAAATTTTCATTTCTCTAAGGCAGACCTGGGATGGAATACTGCGCAATGTTCAACAAAAACTGCACAAACTGGCTCTAGCATATTTAAACTCCAACTGCCCCAATAGGGTGCCTACTAAACCAATATGACAGAATGGCAGTATCTTAGCTTCCTTCAATGTAAAT | |||||||||