| mature miRNA: GGAGGCATTGACTGGTGATGA species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|49444135|gb|CO362818.1|CO362818 RTK1_6_A05.b1_A029 Roots minus potassium Pinus taeda cDNA clone RTK1_6_A05_A029 3', mRNA sequ GGAGGCATTGACTGGTGATGA EST sequence (targeted fragment marked with yellow): TTAAAGTAACGATAATATACTTTATTTCAACAACAATTAATTCTGGCAGCAATCAGCCAACTACAATATGAGTTATTGGAGTCCAACCAGTTCACTCTTCCATCCGTCTCCTGGATTCTTCTCAACTCCCTCTTATCATCATCAGGCCAGAAGCTCTTAAAAAAAGCTCTATAGCAATATAGACTTTTACATAAATAAATTCAATATTAGATTCTCAAATAGAGCTTTGAAACCATAACTCATGTTCATAGCACAATTCGGAGATAGAGTACTGTTCTAAGGAACTAATAGCTAAACCCTTCCATCTCCAGTCAATGACTCCTAGGATGATATGAAATGAAAATGCTAATAAAACACAGTTAGAGCAACATGTTTGCACATTGAACTGTCAACTGCATGAAATGCCTAGAGTGCTCTGTACCCTTCCGCAGTCGATAAATAGGCCGTAATCTATTCCCTTTTGTCTTCTTCTGTATCGTCATTCAAGCTGAAAACATCTTTGCTAGTCTCTTTCTTCTCTGGCATTGCAGAGTTTTCATCACCGTCAACCTTTGCTAACGACTTAGTCAAAGACATCGTCTCTTCTTCACCAAACTCTTCTCCTACATCATCTGAATAAGCATATNCTNGTGGAGTTTTGAGATGGAGCCCAAAGTGCACAGATGACACAAAGCANAGAAAATGAAAGAACATGCCAAAATGCACTTATAACCCATGCACTCTGCCAACGCTCACTGAACGGATCAGTTGCCTTGAAATACAGCTCATATCCNATCCATGCCAC | |||||||||
gi|74162265|gb|DT632196.1|DT632196 EST1147127 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFH48 3' end, mRNA GGAGGCATTGACTGGTGATGA EST sequence (targeted fragment marked with yellow): CGGCCGGGCCAAAGAGCTGGACTCTGAGTATATTGATCGAGAATATGTTTTTGTCGCTGCGACACCAACAGAGCTTTCTTCTTCATCATTCAGTGCCTCTGGGGTGGGGAAGTCGCCGGCTAAGGTACTCAGTTTTCCAATAAAGAACATTCAAAGGAGTTCATCTATAAGTGCACCAATGAAAATAGATAGGGCTGCAGTAGATTTTGTGGGCAGTTTTGAAAGTCCCGGGAATCGTAGTTCTATCCGATCAGGAACTTCTCCCAGCTCAGCTGATTTAGTGGACATAATGGAACAACCATCAGTGAACCCATTAACAAGGCTTCAGTCATTAATACGGTGTGCTCATGCAATCACTGAGCTAGCAAATGAAAAGCTCAAGGCAGAGAAGCAGTTAGAGGCATTTTCATCTCAGCTTGTTTGCTTAGCTATTTGGAAGCAGGCCTTGCATATATGCTATGACTGGGCTGCCGCTGCTACAGGAGGAAGTCCTTCCTCAGATGTTATCATCAGTGATGAGGCTCTGAACAGTAGTGCCAACATTGCTCACATGTCAGAAGAAGTAGATTTCCAAGGAGCAGCAACAGCTTGCTCTATGATGGAGCGTGAATTCCTTATTGCAGTTGAGCGAGCTGAAAAACATGCCCCATTAGATGTCAATGCAGAGATGCCAGATGCAATGGAGGCTATATATCAGGAAGCTCTTGCATTGGGCAGAA | |||||||||
gi|48934568|gb|CO164027.1|CO164027 FLD1_45_G10.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_45_G10_A029 3', mRNA sequence GGAGGCATTGACTGGTGATGA EST sequence (targeted fragment marked with yellow): GTCATTTTATAAATCTGAAAATATATTTCATGTCCTTTGGACTTGAATTGCAGATAGAAGTAATCCCTCGTCTGTAGAAAAGGGTAATGCATAAAACATTGATTAAACAAAAAATGCTGTAAATGTTCATTGGCTCGGAAATAGTTTTCAATGCAATAAGTTGGAGACAATTTAACATATCACCGAAGCCCTCACCTCCACTGTAGGAAAAAACTCCATTTGCACTCATATTCCGTTGCAGTAAAGATATGGAATCTTATAAAAGAGAACCACTAAGCATGAGTTCACAGCTTTACCGCCCAATTTTTTTTCATAGTAGTACAATATATACATAAATAGGTTTGATAGAATTCGTTCAGATCCTGTGGTTTGCAGTTGCAATCTGCAGAAACCATGCAACTATAACTTCTGCATATGTTCAGTGACATCAGTGTTTTAGGGTTATTCATTATACTAGTCAATGCCTCCGCTTGTTGGCAATCCATTTAAGACCTTTATCATGTCATAGGAAAACCACTGCATTGTGATAACAGGCCCAACAAGGGCAACACGGATTGGGAGACTTCTGGTGAACAAATTAACTGCTCCGATGTTCTTTACAGCCTGAATAATTGTATTTGCCTTGTTGTTATACAAGCATGAAACAATATTATCAGCGGGAGTTGCAAGGACAGTACCAACAGTACCGGACATGTACCCAGCCGTGCATGTTACTCCCAATTGTTGCATTATTGAACATTCAGCCTTTTTCTTT | |||||||||
gi|70782121|gb|DR691769.1|DR691769 EST1081856 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWADC85 3' end, mRNA GGAGGCATTGACTGGTGATGA EST sequence (targeted fragment marked with yellow): GATTCGCACCAAGGCCAAGGCCGAGAAAAGAGAGGCTGAGTATAGATCCGAAGCTCGCATAGAATTTGTCTCGGATATCCATTAAAAAAATCGAAAGGAAAAACTCGGCTGCTCCCCACTCACTGCTCAGAGCCACCCCGCGGCACCTCTCTTTAGGCCGATCAGAACTCCACGCAGGAATTCTGTGAACCGACTTATCCATTCTCATTGCATGCAGGAAGCCATTCTCTGCGCGAAGGGACCTTCTCGCGGATTGACTCTCTTCGTCGTGTTTTCGACCACGTTTGTCTTAAGCTCACAGTAGAAACCCCGTGTGAAGATTGACAGGGCCAAGTGCATCACGACTCATCCAGGGACGCCTTTGTCACAAATTTCCTTGCTATATGTATGCTGTCAAGCACATTAAAGTCAATGTGAGAAGTAGGGTTGGGTATTGGTGCTATTTTTTTTATCAGCATCCAAGGAAATCATGATCTGAACATTAAACAATATGCACCACGAGCTTTCCAGAGCATAGGGCATGCAATAGCGAGTAGGGTTTCGAGGGTTTTCGTTTTTCTTTCAGCACAGGTCAATGCTTTCTGGTTCAGGAGTTTTATAAGTTCACTAATAGACACAATAAAAGCGGCACGAGCTGGTTTCTTAACCAGTAAAAACAAATGGCGGATTTGAAGCTACCAGATTTCTTCAATTACCCCCCTTACTTCACCTTGCAGCCTGTAAGGGATACTCGG | |||||||||
gi|68083310|gb|DR176978.1|DR176978 RTMNUT1_2_F04.b1_A029 Roots minus micronutrients Pinus taeda cDNA clone RTMNUT1_2_F04_A029 3' GGAGGCATTGACTGGTGATGA EST sequence (targeted fragment marked with yellow): AATTTTCAAAAGCATCCAACTCAACATTATCTTCAGCATTCAAATTCAAGGTCAATAAAAGACTTTCCATTTAAGTGTGCCCAAAAGCTACCTTCATGTAATGTGACTTCTATTTGTGTAGAATTTATTTTTAAATCACCATAGCCTATAATATTTTCATTGCCATTAGTGTTTCTGTCCACATCATCATTTCCTCGGATCATTATCATGCAACCATATTGTCCCTCCCTAGGTGGTTGATTGAGCACACTTAACCTGCCAGAAACGATTGTGTTTTTTCTAACAATGCAATTATCTGTTGTTAACACCAATCGATGCTTCCTACCGAGTAATTGTTCAACGCGTTTGATATTGCCAGCAGCTAGAGCTTTACGGACAAGAGTTGAAGAGACCTGCCCTTTCTCTCGCAAATCTGTTCCTGTATTTCCTTGTTCCAAACTTGATCTATCAAACTTATCCATAACAGGATCTACAATGTAAGCCTTAAGACCATATTCCCCACACAACTGGACCAAATCGGATGCATCACCCGAAGCCTTGTACCCAAATCTGTAATTTGCACCTGCTACCACTCCCTCTACTCCTAATTCCTTTGATAATCTCTCTACAAATTGGCGAGGACTCAAATAACGCACTTGAGAGAATTGACATGGTATTCATGTGGAACCACACCACCACATAAAGGTGCCCACAGAGAAAGTACA | |||||||||
gi|70977186|gb|DR745929.1|DR745929 RTCU1_33_C02.g1_A029 Roots plus added copper Pinus taeda cDNA clone RTCU1_33_C02_A029 5', mRN GGAGGCATTGACTGGTGATGA EST sequence (targeted fragment marked with yellow): GAGTTGTAAATTCAATTGAAAATCTCTATCTCAGCAACACATTATACTACCAAAATTAAATAGCATTAAAGCCAGGACAGCCTTAAGCCAACCCATCTCAAGAACTTGGCTTTAAAAAAATAAAAGCTTCATAATGTACTACTAGTCTGTAAGTTCTGCATTTCACCAAATCAGGAAGAAAAAAATACAGCTGATCCAATAACTTCAATAATTTACTCATCATCCTCTTCATCAGCACCAGCATTCAAAGCATTCAACCGAGCAATCAATTTTGCTTTTCTCTCCTCATAGGTTAGTTTCCTTGTCAAGTAATGCTTCTGCACTTTAGGGACATGTTTCTCAGTGTATTTGATTGTTGGGTCTGCTCGAATTGCAGCATGCACTGACTTGTACAATTCTTCTATGTTCTCAGGCTCAATACCTCTCTTAACATATTCAGAAAACTGTGATTGATACTTATCTGGCTCATCTTCATTCAATGTCTTCATGTATGAAGCAACGTGACCTCCAAATATGTACTTTCGATGGACCTCAGCATCCAAGTTCTTGCTTTCCTTGTTATAACCAGCAAAACGCTTTTCGCTGTGAGGAATATCTAATCCTCCATCCAAAGCACCCTTCAGAGCTCCGAAAACTCTGTTGCCAGTGGTGGTCCTCA | |||||||||
gi|74163971|gb|DT633902.1|DT633902 EST1148833 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMG004 3' end, mRNA GGAGGCATTGACTGGTGATGA EST sequence (targeted fragment marked with yellow): CGGCCGGGGGGATTTAGAACGCGGAGTATGTTCAAAGCGGGTGGTGATTTAGCCGAGGGCGAAGAGGAGGACGAAGAAGGGCTTCGTAACAAACGTGGCGATTGATCCTACCTTAGCCTGAAAATGCTGTCAGGAGGCTACGCAACCAGATCCGACACTACTACTGTCAACAACGGATCCGCTAATGGCCCAATAGGAAGTGCTCCCCCAAGAATTAACTCGATACAAAATAATAATCCAGGAGCTGTCAGGCCTGGCTGGGGAACCATGCCCCTTCACATGAATCCTTATCATCCCCAATCAATGCCTCTTCCGCCCCCCAATGGTATGCAGGGTCAGCTTGTGTGCAGTGGATGTAGAACTCTTCTTGTTTATCCGCAAGGTGCACCAAATGTTTGCTGTGCAGTATGCAACACAGTCACTCCAGTTCCACCTCCTGGGACAGAAATGGCTCAGCTAATCTGTGGACGTTGTCGTACATTGCTAATGTATGTTCGTGGAGCAACTAGTGTTCAGTGCTCTTGTTGCAACACAGTTAATCTCGCAATGGAAGCAAATCAGGTTGCACATGTGAGTTGCGGGAGTTGTTTTACAACACTTATGTACCCATATGGAGCTCCATCTGTAAAATGTGCTGTCTGCCATTATGTTACGAATGTTGGACAAATAAGCAATATGAGAATGCCACTTCCTGTACAAAGACCTCCAGCGGCAGCTACAACCCCAGCTTCTAGTTCTGCACTTCCAACACGATCACAAACTCAAACTGTGGTTGTTGAGAATCCAATGACAGTGGATGAAAGGGGGAAAATGGTGAGTAATGTTGCGGTTGGAGTTACTACAGAGAAGTTATGACACAT | |||||||||
gi|70972854|gb|DR742418.1|DR742418 RTCU1_3_H05.g2_A029 Roots plus added copper Pinus taeda cDNA clone RTCU1_3_H05_A029 5', mRNA GGAGGCATTGACTGGTGATGA EST sequence (targeted fragment marked with yellow): GATGCCATACACATTTATATAATCGCCAGTCAATGCTTCAAGATGTTGCTGATTTAGACCTGTGTCATTGTGAAGGTACAGTTGGCGTTCCAAAGCAACTGGTTATAACTGGGGACCCTGCTTCCATTCCCAATGCCGTTGCTAAAGCGGGGCTAAAGCTGCCACTGGTTGCCAAGCCATTGGTAGTGGATGGCACAGCGAAGTCACATGCATTGTCACTAGCATATGATCAGTTGAGCCTGTCAGAGCTTGACCCTCCTCTGGTGCTCCAAGAGTTTGTAAATCATGGTGGAGTGCTTTTCAAGGTTTACATTGTTGGGGACACTGTTAAAGTAGTGCGAAGGTTCTCTTTACCTGATGTGGATGAAAGTGCATCTTTGGGATATGGAGTGATTCCCTTTCCAAGGGTGTCAAGCGCTGCAGCTTCAGCTGATGATGCAGATTTAGATCCACATGTTGGGGAGTTGCCTCCAACTTTGTTGCTTGATAAACTTGCAACCGAACTCCGTCGAAGACTGGGACTCCGACTTTTTAATTTAGACATCATTCGTGAACATGGAACAAGAGATCACTACTATGTTATTGATATCAACTATTTTCCTGGGTATGGAAAAATGCCCGGATATGAGCACATTTTCACGGATTTTCTTTTTAGCCTAGTACAAGGAAAGCATCGAAAGATCACAGGAGCTGG | |||||||||
gi|70776774|gb|DR688298.1|DR688298 EST1078382 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWAC458 3' end, mRNA GGAGGCATTGACTGGTGATGA EST sequence (targeted fragment marked with yellow): GGGATATCCATTAAAAAAATCGAAAAGAAAAACTCGGCTGCTCCCCACTCACTGCTCAGAGCCACCCCGCGGCACCTCTCTTTAGGCCGATCAGAACTCCACGCAGGAATTCTGTGAACCGACTTATCCATTCTCATTGCATGCAGGAAGCCATTCTCTGCGCGAAGGGACCTTCTCGCGGATTGACTCTCTTCGTCGTGTTTTCGACCACGTTTGTCTTAAGCTCACAGTAGAAACCCCGTGTGAAGATTGACAGGGCCAAGTGCATCACGACTCATCCAGGGACGCCTTTGTCACAAATTTCCTTGCTATATGTATGCTGTCAAGCACATTAAAGTCAATGTGAGAAGTAGGGTTGGGTATTGGTGCTATTTTTTTTATCAGCAACCAAGGAAATCATGATCTGAACATTAAACAATATGCACCACGAGCTTTCCAGAGCATAGGGCATGCAATAGCGAGTAGGGTTTCGAGGGTTTTCGTTCTTCTTTCAGCACAGGTCAATGCTTTCTGGTTCAGGAGTTTTATAAGTTCACTAATAGACACAATAAAAGCGGCACGAGCTGGTTTCTTAACCAGTAAAAACAAATGGCGGATTTGAAGCTACCAGATTTCTTCAATTACCCCCCTTACTTCACCTTGCAGCCTGTAAGGGATACTCGGGAAAAACAAGTGCAGGTGTGGAAGGAGCTGATACTAAACTATTGCAAGCATCATAAGATCTTTATCATTAGCTTAGAAGAAGAATTTCCTCTGTTTTCTAACCCAGCAATTGATAGAAAATTGAGCTATGAAGCTAAGAAGTCTTCCTTTCAGCATTAGTTTCTGAAGTCGAGCTGAATGGCTAGATAAAGGACAGAAAAATGTTTAATTCTTTGGCGTCGAATCCAGGATTGGGCTGAGTACATATTGAAGTTTGTTCATG | |||||||||
gi|11127260|gb|BF221128.1|BF221128 NXCI_163_G01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda cDNA clone NXCI_163_G01 GGAGGCATTGACTGGTGATGA EST sequence (targeted fragment marked with yellow): TAGCCGAGGGCGAAGAGGAGGACGAAGAAGGGCTTCGTAACAAACGTGGCGATTGATCCTACCTTAGCCTGAAAATGCTGTCAGGAGGCTACGCAACCAGATCCGACACTACTACTGTCAACAACGGATCCGCTAATGGCCCAATAGGAAGTGCTCCCCCAAGAATTAACTCGATACAAAATAATAATCCANNAGCTGTCNGNCCTGGCTGGGGAACCATGCCCCTTCACATGAATCCTTATCATCCCCAATCAATGCCTCTTCCGCCCCCCAATGGTATGCNNNGTCAGCTTGTGTGCNNNGGATG | |||||||||