| mature miRNA: TCGGCCTCGAATGTTAGGAGA species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|7676963|gb|AW755243.1|AW755243 PC12H05 Pine TriplEx pollen cone library Pinus taeda cDNA clone PC12H05, mRNA sequence TCGGCCTCGAATGTTAGGAGA EST sequence (targeted fragment marked with yellow): GGGCAGAGTCTATCGAGATAGAATTCAGTGACTTAACTTCTTCACCAGTTTCGTTTTTGTGTTCCTGTGTGGTTTAGGGAAATGTCCACTAGATTAGATTATGGTGGAGTTGTTGCAGAGGAAAACGAGGGACACTAATGGATTATTAAGGCTAAAATGGTAGTGGTACTCACTCTACAAGTAATTAGTTCGTTGCCCTTCAATTTGCCAACTGATCGAAAGGTCTATACAACTCAACTCTCCTACCGTTTGAGGTCGACTATCGAGGAAAGCATCATCTTTCATGAGATAAAAACAATGAATTTGCAACCCTTTTTNNNNA | |||||||||
gi|74155597|gb|DT624330.1|DT624330 EST1158605 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PIMAD46 5' end, TCGGCCTCGAATGTTAGGAGA EST sequence (targeted fragment marked with yellow): CGTTTCTGAAGTGACAGAAATTGGGAAATTAATGACTGTTTTTTGTCCGTTATTTGACGTGAAGTATTAGGGTTCGTTAATGGCGAACGCTGCGAGTTTCGATTCTCAGACCTCTAGACTAGCGATGGATAACAGATCGGTACTGAAGCCCGAGCCTCTGGTGAAAATGAGTGTCAATATTTCTGGTTCTGGTGACGGCGGATTCACCGTCAATAGACAGGGGCAGATTTCCGTCAAGAAAGCCCGCGCTGTTCACATCCAGGTTATGAGAATCCGCGAAGAAGATGAGCATCTTGGTGAGGATTTAATGGAGGGCGTGAATCCGAAGGACAGGTTTGTGTTTTTCCCGATCGCGTCGCAGATGAAGGACATGTTCTTTGAGTATTCGAGGCCGACTTTCCCGTCGCCGCTCGGCATGAACGCTGGAGTTCGGTCGCTCTGAGAAGATTCTGACACTCATCTGAGTTTTGAGAAGGTTTTGTGTGTAGATATTTGGATCTGAGCCATGAGGCATTTGAGGCCTTCTGTATATTAATTGTTGTGAAGTTATTTCTGTCTGTAAATGCTTTCCCTGGCAGTTTTGTTTAAAACCTGCTGTGTTGGAAATGGGGCAGTTGCTTTCTGCCAGAATAATGTAAATGCAATACAGTGATCAT | |||||||||
gi|5649417|gb|AI919771.1|AI919771 1315 Pine Lambda Zap Xylem library Pinus taeda cDNA clone A9_PL12CSUH, mRNA sequence TCGGCCTCGAATGTTAGGAGA EST sequence (targeted fragment marked with yellow): TAGAAGGNATTTTGGNTCNTAAAANCCCNTGNTATTTGGAAGGGTGGCTCTTGGGGATTCAGACNNGGGATNTTTTTTGTCCTTGNTATTCCCCATCCCCAGACCCTTGGTTAAGTGTTTTAGTNATGGATCTATGTNCACGAGAAAGAGGCTTTGAGCTTAGAGGCTGATCTTGCTTGTGAGATGGGCTCTTGTAATCNCTGGCCAGTGTCGNACATTCTGTAANTNTGTATCACCGGTGATGCATTTTCTGCTATATGCCAGTTCATGCATTTCAATAATAGAAGAGTATGTTTTTACATCNTTGTAATTTTGTATTGATGGTGACTGCAATTCTGCAATGCCAATCATGCATTCCATTACATACAGTATGTTTATTATGGTGTACCTCTTTCAATGTTCGAGGCTGATCCTGNTATGAGATGGCCTTTGTAATCCTGAAGCGGTTTAACATTCNTGTAATTTCGTAGTTGATGGCCATGCAATTCTGCAATGCCAACTCACCCATTTCAATATATAANGAGTATTTNTA | |||||||||
gi|8179379|gb|AW985075.1|AW985075 NXNV_130_F02_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone NXNV_130_F02 5', mRNA seq TCGGCCTCGAATGTTAGGAGA EST sequence (targeted fragment marked with yellow): AGGCTTTGAGCTTAGAGGCTGATCTGCTGTGAGATGGGCTTTGTAATCCTGGCAGTGTTTACATTCTGTAATTTTGTATCACGGTGATGCATTTTCTGCTATATGCCAGTCATGCATTTCAATAATAGAAGAGTATGTTTTACATCCTGTAATTTTGTATTGATGGTGATGCAATTCTGCAATGCCAATCATGCATTCCATTACATACAGTATGTTTTTATGGTGTACCTCTTTCAATGTTCGAGGCTGATCTGCTATGAGATGNNCTTTGTAATCCTGAAGCGGTTTAACATTCTGTAATTTCGTATTGATNNNNATGCAATTCTGCAATGCCAATCATCCATTTCAATATATAAAGAGTATTTTTANNNAAAAAAAA | |||||||||
gi|11127200|gb|BF221068.1|BF221068 NXCI_162_H10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda cDNA clone NXCI_162_H10 TCGGCCTCGAATGTTAGGAGA EST sequence (targeted fragment marked with yellow): ATATATTGATATGGCAGAAGGGATTGGGAATGAGGATGCCTGTGGGAATGTGGAGGAGAAATATGGAGTCAGAATCGAGAGGCGCCCCTCGCAGTCTCGCTTGTCCGATCTTGATATCCGTTCTTGGCCTAAGTGGGGATGTCCTCCAGGAAAGTTTCTACTGAAATTCGAGGCAGAGGAGACATTCTACCTTGTGAAAGGTAAAGTGAGAGCATATATGAAGGGATCTTCAGACCAGTACGTGGATTTCGGTGCAGGTGATTTNNNGGTCATTCCAAAGGGGATGAGCTGCACCTGGGACGTGTCTGTNNCTGTGGACAAGCATTACAAATTTGAGCACTGACTGGCAGNNNATCAGCTNGTANTTC | |||||||||
gi|21821417|gb|BQ696101.1|BQ696101 NXPV_036_D04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda cDNA clone NXPV_036_D04 5' TCGGCCTCGAATGTTAGGAGA EST sequence (targeted fragment marked with yellow): CGCAGATGAAGGACATGTTCTTTGAGTATTCGAGGCCGACTTTCCCGTCGCCGCTCGGCATGAACGCTGGAGTTCGGTCGCTCTGAGAAGATTCTGACACTCATCTGAGTTTTGAGAAGGTTTTGTGTGTAGATATTTGGATCTGAGCCATGAGGCATTTGAGGCCTTCTGTATATTAATTGTTGTGAAGTTATTTCTGTCTGTAAATGCTTTCCCTGGCAGTTTTGTTTAAAACCTGCTGTGTTGGAAATGGGGCAGTTGCTTTCTGCCAGAATAATGTAAATGCAATACAGTGATC | |||||||||
gi|70784864|gb|DR694512.1|DR694512 EST1084604 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWAED46 3' end, mRNA TCGGCCTCGAATGTTAGGAGA EST sequence (targeted fragment marked with yellow): GACAGAGTACTCACGCATGAGAAGGAGTAGTTGTATAATGGGAGATGCATTATTTCTCCTAACATTGGAGGCCGAGAAAAAGATTGAGGAAAAGAATGATATAGCATCACCATGGAAAGTAAGTTATGAAGTGCTCTCTACTTGTCTCAACTGTCCAAGATCTTTCTTTGATCACTTTTTTGTTTTTTTTGGTTCCATGGGCTTTAGATACCTTTTGTCTTCTTGTTCAATGATAGATGTGGTTTAATTTTCACTTCCTTGTTA | |||||||||
gi|74164642|gb|DT634572.1|DT634572 EST1149503 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMG743 3' end, mRNA TCGGCCTCGAATGTTAGGAGA EST sequence (targeted fragment marked with yellow): CGGCCGGGGACCTCAGTCTTACTCTCAACAAAAAGATGCAAAGATTGATGATTTCTTTGAAGGAGCAATCAAGTATGAGAAGGAGCGGTTGTATAATGGGAAATGCGTTATTTCTGCTAACATTGGAGGCCGAAAAATTATTGAAGAAAATAATGGTATAGCTTCACCATTGGAGGTAAGTTATGAGGTGCTCTCGTATCTGGTGTCCACGATTTTTCTTTGATCTATTAGTTCAGGTTCTTTTGTTTCTTTTTTGGTTCCATCAGTTCTAGATATCTTTTGTCTTCTTGCTCAGTGATGGATGTAATTTAGTTTTCACTGCCTTGTCAGAATAGTGAATTTTTTTATTATATTTGTTGGCTAAGTGTATAGCTTTTGTTTATTCTGGTTTTAACAACAAGAAGATTTTCTTTCTAACATGTTATATGTAATTTGAGAAAAAGAGTAGTATAGCATCACCATGGGAGGTAAGCTATTAGGTGCTCTCTACTTGTCTCTGGTTTCCACAATATTTCTTTGATCTGTTCGGGCTCTTTTGTTTCTTTTTGTCTTTGGTGTCCATAATCTTTCTTTGATCTGTTCGGGCTCTTTTGTTTCTTTTTTGGTTTCATCAGTTTTAGATATCTTTTGTCGTCTTGCTCAGTGATGGACGTGATTTAGTTTTCACTGCAATAATGAGTTTCTTGATTATATTTGATGGCTAAGTGTATAGCTTTTGTTTATTCTTGGTTTTGGTAACAATAGGATTTTCTTTCCAAAGTGTTATATGTAACTTTTATTTCCTTTCCAACATGTTATATGTAACTTTT | |||||||||
gi|17244305|gb|BM158566.1|BM158566 NXLV_036_C05_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA clone NXLV_036_C05 5', mR TCGGCCTCGAATGTTAGGAGA EST sequence (targeted fragment marked with yellow): CGGCCATTATGGCCGGGGAGGCTGATCTGCTGTGAGATGGGCTTTGTAATCCTGGCAGTGTTTACATTCTGTAATTTTGTATCACGGTGATGCATTTTCTGCTATATGCCAGTCATGCATTTCAATAATAGAAGAGTATGCTTTACATCCTGTAATTTTGTATTGATGGTGATGCAATTCTGCAATGCCAATCATGCATTCCATTACATACAGTATGTTTTTATGGTGTACCTCTTTCAATGTTCGAGGCTGATCTGCTATGAGATGGCCTTTGTAATCCTGAAGCGGNNTAACATTCTGTAATTTCGTATTGATGNNCATGCAATTCTGCAATGCCNNTCATCCATTTCAATATATAAAGAGTATTTTC | |||||||||