| mature miRNA: TCTCCGGGAATCCAATGCGCC species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|57884266|gb|CX649437.1|CX649437 COLD1_35_F10.b1_A029 Root cold Pinus taeda cDNA clone COLD1_35_F10_A029 3', mRNA sequence TCTCCGGGAATCCAATGCGCC EST sequence (targeted fragment marked with yellow): AAATCAAATATCAAATTGATTTATTAGACTTCTGGTAGTATCTCTTCTCATTATACCTATCTATTTCTCTGGATTTAAATCAAGAATTTCTTAACTGAAAATACATATTCTTAACCAGTGAAAAATAAACTCCGTCGGGAACAAAGGTAATTAGTCTGATCCTCAGAAAACCAATTTGATATAAAAGAAGAGATCTCCAAGGAAGATATCATGTGTATTATTAAACAGAAAACAGATCTGCCACAGATCGGCCTCTGGAGAGAGTTTTACCGTAGTTGGCCAACCAAGACTTTGAGATGAATATATTTCCTCTCAGCGTCCAATCTCTGCAGTAGAATATAGCAGATTTCGGTTGACATCCTCCATTTCTCAAGAAAAGGCGGCGGAAACGCATGTGAGTCTGCTCCTCCTGAATCTGGGGCAAAACGGCCACTTGCTTTCTCTGGCTGAAACTAAAATGCAAACCATCGATCCATCGAATCAATAAGAGCACGGAGAACCAGGGCTTCCCCGGAAATCAATACACCTTCCTCCTAAACGCGTTTTCACGCACAGCACGCGCGTTGAAAGGCGTTCAAGAGGAAGGCGCATTGGATTCCCGGAGAGGCTCTCCTTCACGCGTCACTGCGAAGATGCACCTGGAAATGAAGTAGGAGTCTGCCATCCATATTTGGAATACCCAACCTCG | |||||||||
gi|2778329|gb|AA739778.1|AA739778 543 PtIFG2 Pinus taeda cDNA clone 8879M 3', mRNA sequence TCTCCGGGAATCCAATGCGCC EST sequence (targeted fragment marked with yellow): AACTGAAAATACATATTCTTAACCAGTGAAAAATAAACTCCGTCGGGAACAAAGGTAATTAGTCTGATCCTCAGAAAACCAATTTGATATAAAAGAAGAGATCTCCAAGGAAGATATCATGTGTATTATTAAACAGAAAACAGATCTGCCACAGATCGGCCTCTGGAGANAGTTTTACCGTAGTTGGCCAACCAAGACTTTGAGATGAATATATTTCCTCTCAGCGTCCAATCTCTGCAGTAGAATATAGCAGATTTCGGTTGACATCCTCCATTTCTCAAGAAAAGGCGGCGGAAACGCATGTGAGTCTCCTCCTCCTGAATCTGGGGCAAAACGGCCACTTGCTTTCTCTGGCTGAAACTAAAATGCAAACCATCGATCCATCGAATCAATAAGAGCACGGAGAACCAGGGCTTCCCCGGAAATCAATACACCTTCCTCCTAAACGCGTTTTCACGCACAGCACGCGCGTTGAAAGGCGTTCAAGAAGAANGCGCATTGGATTCCCGGANAAGCTCTCCTTCACGCGTCACTGCGAAAATGCCCNGGGAAATGAATTAGGAGTCTGCCCNTCCNTATTTGGAATACCCACCCTCCCAGGGGTNGG | |||||||||