| mature miRNA: TCTTCCCTACTCCTCCCATTCC species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|21689426|gb|BQ635273.1|BQ635273 NXRV078_C10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV078_C10 5' simil TCTTCCCTACTCCTCCCATTCC EST sequence (targeted fragment marked with yellow): AGCGGCGGAGAAGGAGAAGGAGAAGGAGAAGGAGGAGGAGGGAAGAAAAAAATGGCATTGGCCATGTCCCAGAAATTGACCCTTGGTTATGCTGCTCTGGTTGGAGTGGGCGGACTTATCGGCTATTTAAAAAGTGGAAGCAACAAATCACTTGTATCAGGAGGTGTTTCGGCTTTGCTTTTGATAGTAATGGGGTCTCGTTTCAAGAAATCTGGGAAGGTTTTCCCTGCCGGTGTTGTATCCCTTGTCTCTTTGATCATGACTGGTGGTTATCTTCATGGCATATTGCGCAGTTCTCATGCATAGAATAATTATGAAAGTATATGAGGTTGAAAGCCATTTTGTGCGATGAGTGTTTATAAATCACATTGTAATTTANNTCTTCTAGATTTGGATCTCGGAAATTTCTTNNNNATGATATTTCTTTGGTAANNNNNNTCCTAAAANNATCGAT | |||||||||
gi|74155843|gb|DT624756.1|DT624756 EST1158851 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PIMAG12 5' end, TCTTCCCTACTCCTCCCATTCC EST sequence (targeted fragment marked with yellow): GACGACATTAGCTAGTCCTTCTCTTTCACAGTCGTCCCTAATCAATTCTCTAGCTCTGTGCCCTACTCAAAACCCTCTCTCCAGAAGCCTACCTGCTAATCCCCTCGGATTCAGACAAGTTGATCGCAGTTGCACGACATTTAGCTTGTCGGTAAGAAGCAGTTCTAGAATCAGTGGATCACAGTACAGATCTCCCCACAAGGTTCGAGAAGGGCATATTGTGTGTGCACTTGACGATACACAGAAATCTGGGTCGGTTTCTGAATTTCTAAAGGCGGAGGGAGAGCCGGTGCCCGCGGTTAATTCAGAGGCGGCGGGAGGAGGAGGAAATAATTTCGGAGGCAGCAGCGGCGGAGGCGGAGGAGGAGGAGGAGGAGGAAATAATTTCGGAGGCAGCAGCGGCGGAGAAGGAGAAGGAGAAGGAGAAGGAGGAGGAGGGAAGAAAAAAATGGCATTGGCCATGTCCCAGAAATTGACCCTTGGTTATGCTGCTCTGGTTGGAGACTGCTGAGCTGCCAACGTGGATACCTTTGCTGTCCACATGAATTTTGCTGATGGCTGCCGTACGGACTTCACGCGTATGGACCTTTTTTTGGCATTGGGCGGACT | |||||||||
gi|34493226|gb|CF475854.1|CF475854 RTWW2_15_G07.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda cDNA clone RTWW2_15_G07 TCTTCCCTACTCCTCCCATTCC EST sequence (targeted fragment marked with yellow): CTTACGATGTAACTCTAATGCTCAGCTATGTCCCATACTGTAAAAACAACAATGACTGTTGGGCTGTTTTGCCGTCTATGAACTTGAGGAAACGGAGATGTTTTGTCTGTGGGAGCATTGGGAAATATATTTATGTTGCGGGGGGCCTGACGAACGAGAGGCTCGAGGGCCCTTTTGTGGGTTTGGGAAAAAGGAGCGCCGAGAGATTTAATACCGAGACCAACGAATGGGAAATTTTACCCAGTTTGAACAGAGAGAGGGTCAATGCCATAGGGTTTGTGTTGAATGGGAGGTTTTGTGTGATGGGAGGAGTTGGGAAGGGGTCGAGGACGTCTAGTGAGTTTTATGATCCGGAGGCGAGGAAGTGGGTTTTGGTGCCCAAAATGTGGCCGAAGCCGACTTACTTGTCCTATTTTATGCGGGATGTTGTGGTTGTGGAGAATAGGGCTTATGCAAAAAGGTTAAATTCTGAGCAGACCGTGTTTTCTTTGAGTGTGTGGGAGTATTGCCAGGAGCGTAACCGATGGTCAGATTTGGGTGTTGTGATTCGGCATATTTCGAAGCTGGTTCTATGTGATTACAGGTTGGTGTCTGTTGGTGACGAGCTTTGGATCGTGGGGATGAAACCGGATGCAGAACCAGGGTTCAATGTGTTGGTGTG | |||||||||
gi|18434417|gb|BM428403.1|BM428403 NXRV_016_C07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV_016_C07 5' sim TCTTCCCTACTCCTCCCATTCC EST sequence (targeted fragment marked with yellow): CAGCGGCGGAGAAGGAGAAGGAGAAGGAGAAGGAGGAGGAGGGAAGAAAAAAATGGCATTGGCCATGTCCCAGAAATTGACCCTTGGTTATGCTGCTCTGGTTGGAGTGGGCGGACTTATCGGCTATTTAAAAAGTGGAAGCAACAAATCACTTGTATCAGGAGGTGTTTCGGCTTTGCTTTTGATAGTAATGGGGTCTCGTTTCAAGAAATCTGGGAANNNTTTCCCTGCCGGTGTTGTATCCCTTGTCTCTTTGATCATGACTGGTGGTTATCTTCATGGCATATTGCGCAGTTCTCATGCATAGAATAATTATGAAAGTATATGAGNNTGAAAGCCATTTTGTGCGATGAGTGTTTATAAATCACATTGTAATTTAGTTCTTCTAGATTTGGATCTCGGAAATTTCTTAGTGATGATATTTTTTTGGTAACAGTGCTCCTAAANNNATTGATTCCACAGGAATGGGATTGTGGATAATATGTTTTGTGATGTNNNGCCNNNTAATTGCAGTGTTAAAGATTTTGGTGACTATGNNAAGNNNGGNCTATTACTG | |||||||||
gi|20664754|gb|BQ290537.1|BQ290537 NXRV045_E03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV045_E03 5', mRNA TCTTCCCTACTCCTCCCATTCC EST sequence (targeted fragment marked with yellow): GACCCANNNNNGTGAGGAGAGGAAGCGGTGAGCATGAGCAGAAAGAAAAGAAACATGGTAGAAGCTTTGTTGAATATCAATTTCCTTCTCCGCTGTCTCTCTGATATCCAGACGGAGGATTAAAGGATCAAGGATCAGCCTGAACAGCCAAGTATCGATTCTCTGGTAGTTTACTCTCCTCGCTCTCTTCGATGTTCGATGCAATGATTTCCTTCTCTTTGTGTTCAGATTCTGTGGATACATCATGTCATTCATGTCTTTACTGCATTTTCATGGACATCGCAAGAGGGTTTGGCCTTGGAGTTATAGCCGTTTTAATTGGAATGAGAGGAGTGGGGAAGAATACCGCTGTCCAAAATCGTAAGAGAAGAGAGAACTCTACTGCTACGCATTGTTCTGCGTTGATAGCTCATCACGCCGATTGGGGAGATTATACAATGCCCAATGGGTGGTCTCTGTTTACCACCCACTGTGTCATTTCCCCTGCCGGATGTTGAAANNNNTGTGTTGCCTTGTGACTTGGAAATCACACGGAAGATCTCNNNNGNNC | |||||||||
gi|6019835|gb|AW064763.1|AW064763 ST35E04 Pine TriplEx shoot tip library Pinus taeda cDNA clone ST35E04, mRNA sequence TCTTCCCTACTCCTCCCATTCC EST sequence (targeted fragment marked with yellow): GGGTCAGGGAGGGAACATTTCCTAGACGTGGAAACTCTGTAACTAGCTAGTGTGTTTTTAAAATTGGAGGAGAGGGTGGAGTAGGGNAGAGATNNTTTGTATCTTACTTTGCAAGTGTAATGAAGCCCCCGAAATATTATATTTTACAGTACCTTGTAATTTCTANAGGCCAGGTCTTGTCTAAGATATCCGGTATGGACTCNAAGTTTGTNGTTTAAAATTTAGAGCGCTACCTGTAATAGCATAAATATTTTTTGAGGGCAANATATGNTTTCTTTTTTTGGCTTTATTAANGTATTATTTTTAATTTCANGTTTTCTCTAAGAAATCTGGTANGGANGTTGAACGNGTGTTGANAATCTAGAGCACTNGCCTTAGTATTAGTACAACTAATTACGAANGGAGANATCCCTTCTGTCATTTTTATT | |||||||||
gi|61666304|gb|DN608804.1|DN608804 EST961854 Subtracted pine embryo library, Lib_B Pinus taeda cDNA clone PSAA452, mRNA sequence TCTTCCCTACTCCTCCCATTCC EST sequence (targeted fragment marked with yellow): ACCAGGAGAATCCTTTCTGCCAGGGCGTGATAGATCTGCATACCCGCATTGCAAGAAGGAAAATCCAACCCCACAAAAAAAAAATACAGAGCCATCTTTGGCCATATGCTTTCAAAGTCCTGCCTGAAATATTTTATCCCATACAGGGTTTTAATAGATCTATGCTATCAAATATTTAAACTCCAACGAGCTCATATCTCCCTTTCCTCCTTGCCTATCATGGAGGTTCGAAGAATCGTATGACTGTGTCATGCGAGCAGATCTGAAGTGCATCAGCAGCAGAGCTACAAGTGCAGATAAAATAGAGATATGTAGAGAAGGCAATAGGATCCAGGTGAAGTTAAAAAAACCTGTAACAATGCCCAGCTCTCAGATAAGATGCAATCAGGAGCGACTGCATTTGTTTTTTCTCCCCTCCCAGATCCAGTGGCCTTGAAGCTACACGGCATCCCTGTAATACCTGCAGGACATAATCTCCATATTCATCTTCATAGACTATATTGCTGTGTTGCGTTGGAAAGGGAAGTGTGGTGAAGGCAAAAGGAATGGGAGGAGTAGGGAAGACTGGAGCAGAGAATTAATGAAGCAGAGTTTCTCCTTAACCTTAGTCTTACCCTATCCTTCCACACCTCAAGACTTCTAACCATAACACCTCCCTTTCTCGCAACCATCCACCTTCCCTGTTTTCACCCCGCGT | |||||||||
gi|74155973|gb|DT624646.1|DT624646 EST1158981 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PIMAH55 5' end, TCTTCCCTACTCCTCCCATTCC EST sequence (targeted fragment marked with yellow): AAATAAGGAAATCCGAGTAGTCATTGTATCAGTCCAGTATGGCCGCCATCCTGACGACATTACCTAGTCCTTCCTCTCTTTCACAGTCGTCCCTAATCAATTCTCTAGCTCTGTGCCCTACTCAAAACCCTCTCTCCAGAAACCTACCTGCTAATCCCCTCGGATTCAGACAAGTTGATCGCAGTTGCACGACATTTAGCTTGTCCGTAAGAAGCAGTTCTAGAATCAGTGGATCACAGTACAGATCTCCCCACAAGGTTCGAGAAGGGCATATTGTGTGTGCACTTGACGATACACAGAAATCTGGGTCGGTTTCTGAATTTCTAAAGGCGGAGGGAGAGCCGGTGCCCGCGGTTAATTCAGAGGCGGCCGGAGGAGGAGGAAATAATTTCGGAGGCAGCAGCGGCGGAGGCGGAGGAGGAGGAGGAGGAGGAAATAATTTCGGAGGCAGCAGCGGCGGAGAAGGAGAAGGAGAAGGAGGAGGAGGGAAGAAAAAAATGGCATTGGCCATGTCCCAGAAATTGACCCTTGGTTATGCTGCTCTGGTTGGAGTGGGCGGACTTATCGGCTATTTAAAAAGTGGAAGCAACAAATCACTTGTATCAGGAGGTTTGTCAGCGCTAGTGCTCTACTATGTTCATACTCAACTTCCATCAAGGCCAACATTTGCATCAGCAGTTGGAATTGGTGTTTCGGCTTTGCTTTTGATAGTAATGGGGTCTCGTTTCAAGAAATCTGGGAAGGTTTTCCCTGCCGGTGTTGTATCCCTTGTCTCTTTGATCATGACTGGTGGTTATCTTCATGGCATATTGCGCAGTTCTCATGCATAGAATAATTATGAAAGTATATGAGGTTGAAAGCCATTTTGTGCGATGAGTGTTTATAAATCACATTGTAATTTAGTTCTTCTAGATTTGGATCTCGGAAATTACTTAGTGATGATATTTTTTTGGTAACAGTGCTCCTAAAAGGATTGATTCCACAGGAATGGGATTGTGGATATATGTTTTGTG | |||||||||