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mature miRNA: TGAGCTGGAGCTGGGCCAACC
species: Pisum sativum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|261235903|gb|FG538627.1|FG538627 MERIZ0016G03.B MeriZ Pisum sativum Shoot apical meristem ESTs Pisum sativum cDNA clone MERIZ

TGAGCTGGAGCTGGGCCAACC
||||||||||||. ||| ||
CCTCGACCTCGACTGGGTCGG

EST sequence (targeted fragment marked with yellow):
ATGACAACAACAAAATGGGTGGTAGAAGAAGCATCACATGTTTAGCATCATTGATGGTAGCTATGGTGTTGATGATGAACGGCACAGAGGCACAAGACACCCCTTCTTGCGCTTCGCAGTTAATTCCGTGCGCTCAGTTCTTGAATGCTACGAAACCACCAAGCTCTTGCTGTGATCCGCTCAGAAAAACAGTGGAAACTCAACTCACTTGTCTCTGTAATCTCTTCTATACTCCTGGTTTGCCTCACAGCTTTAACGTGAATATTACTCAGGCTCTTGGCTTATCTGGTAAGTGTGGGATTCCCGGCGGTCTCTCCAGCTGCAAACAGGCTGGGTCAGCTCCAGCTCCGACTGCCGGCGGATCCCCACCGGCTAAAGGTGGTGGTGAATCTGGTGATAAAGGAGGTGCAGGCAGAGTCTCCTTCACAGGGTTTTCTTTTGTACTCTTATTAGCATCCATGATGTTCAATTAGGAAAATCTTACTGTATTTAATTTATCTATGTAATTGGCTT



gi|32542732|gb|CD858916.1|CD858916 CI.003C03F020204 CI Pisum sativum cDNA clone CI003C03, mRNA sequence

TGAGCTGGAGCTGGGCCAACC
||||||||||||. ||| ||
CCTCGACCTCGACTGGGTCGG

EST sequence (targeted fragment marked with yellow):
CCGCTCAGAAAAACAGTGGAAACTCAACTCACTTGTCTCTGTAATCTCTTCTATACTCCTGGTTTGCTTCAAAGCTTTAACGTGAATATTACTCAGGCTCTTGGCTTAGCTGGTAAGTGTGGGATTCCCGGCGGTCTCTCCAGCTGCAAACAGGCTGGGTCAGCTCCAGCTCCGACTGCCGGCGGGTCCCCACCGGCTAAAGGTGGTGGTGAATCTGGTGATAAAGGAGGTGCAGGCAGAGTCTCCTTCACAGGGTTTTCT