| mature miRNA: GCAGCAGGTTTTGCATGCTCT species: Populus nigra database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|161934686|gb|DB895557.1|DB895557 DB895557 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus GCAGCAGGTTTTGCATGCTCT EST sequence (targeted fragment marked with yellow): TAAAGAAACTCTCGCCCAAGTTTCTATGCAAGAATCCCAAATGGCCCCTAAGGCAGAGAAGAGGCCGGCTGAGAAAAAGCCAGCGGCGGCAGAGAAAGCCCCAGCTGAGAAGAAGCCAAGAGCAGAGAAGAAGATACCCAAAGAAGGAGCGATTGACAAGAAGAAGAAGAGGGCAAAGAAGAACGTCGAGACCTACAAGATCTATATCTTTAAGGTCCTGAAACAGGTCCATCCTGACATTGGGATCTCCAGCAAGGCAATGGGTATCATGAACAGTTTTATCAACGATATCTTTGAGAAGCTCGCTCAAGAGTCATCGAGGCTTGCAAGGTACAACAAGAAGCCTACCATTACTTCTCGGGAGATCCAGACAGCTGTCAGACTGGTTTTGCCTGGAGAGCTTGCGAAACATGCTGTCTCTGAAGGGACCAAGGCTGTTACCAAGTTTACAAGCTCTTAGCGGCTAGGGTTTGTTGGGTTTTTTGTGGGTTCTGTTTAATTAGTGCTTCTGTCCTATGTAAAGTCTTTTTAGTTTCTGATCTGAATGAATCTGATGTAGGTTTTTTCTTTCATTGAATGGAATTAAAGTTTGTGGTC | |||||||||
gi|161905808|gb|DB879215.1|DB879215 DB879215 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus GCAGCAGGTTTTGCATGCTCT EST sequence (targeted fragment marked with yellow): AAAGAAACAAGAACAGAGAGAGTGACAGAGCCATCAGAGTTCAACTCAGAAGAAAAAAAAAAAATGTTTCAACCCAGCAACCATCCTCAGGATGCATCATCTGTGTTAATGCAAGTGGATCCGAAAGAAACTAGTGTGGTTGTCAGCGATGAAATGCAAAATGGAGTATTTCCACAAGCACAAACCATCATCTACAATTCTAAGAAACTTCAAGATGATTTGCATGTGTTAGGGATGAAAATCAAGCATCACGAAGACAACATTAAGTTACTGAAGAGAAACAAATACAAATTAGATGATTCTATTCTTGATCTTCAAGTTACCCTTGGCAAATATCATTCTTCAACACAGCCAAACACTGAAAATGATGCCCATTCCTCTAATCCGAGTGAGGAGGAAACGACCAAACAAATTCTACGGCATGAAAAATCTGCTGCGGGTATTTTGTGCCAGCTGAAAAAGCACCATGACACTCAAACTTCTCATCTGTCATTGACAAAAGATGTACTTGGTGTTGTTGCTACACTGGGCAAGGTAGATGATGATAATCTTAGCAGGCTTTTCTCCGAGTACTTAGGTGTGGAGACTATGCTGGCAATTGTCTGTAAAACGTGTGAAGGTGT | |||||||||
gi|161922532|gb|DB905116.1|DB905116 DB905116 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus GCAGCAGGTTTTGCATGCTCT EST sequence (targeted fragment marked with yellow): TCACCAACCTTATCACTTCACCAGAGCTAGCCATAAGATATGAAGCTACTCTTGGTTTTTATCTCCATCCTGCTCATTCAGGCTTTTTTAGGGAGTTCATTCCTTAGCAATGCTGCAAATTGTCCAGCTAATATGGATGAAGAAAGCGATGTGGTAGCTATTGATAAGAAACATATACCTAAAAGAATCAATTGTGGTTATTTATGCGCAAGGAGATGCAGGGCATCGTCAAGAAAGAATGTATGCCACAGAGCATGCAAAACCTGCTGCAACAGATGCCGGTGTGTTCCACCAGGTACCTATGGCAACAAGAGTGCATGCCCATGTTATGCAAGCCTTAGGACCCATGGAAACAAGCCCAAGTGCCCTTAAATTTCATGCAACTATGTAGTTTCTGGAGTGCAGGACATCCAAATGTCTTTTGAATGTTGATTCTACTATTTCCTAGCTGTTAATCTATGTGTTACCTAATAAGGGGATAAAATCAAGCTATGCTTGAGGATTTTTAAGGCCTCGTCAAGAGGAATTTGTTCTGGTTATAAGTAATTGTTTTGTCTCCATCTTTATACT | |||||||||