| mature miRNA: ATATAACATCATGAGCAATCA species: Populus tremula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|60704016|gb|DN493826.1|DN493826 I012P07.5pR Populus senescing leaves cDNA library Populus tremula cDNA clone I012P07 5', mRNA ATATAACATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): CTGTTCAAGGAGAAAGCAACTGTATATTTCCCGAGGACCCCGGTCAGCTGTTGAATGATAGTTGCATAAAGAGGAAAGGAGCTTCTCAGCAGGACTCTCACGGGGAGCCAAAGGACCTGAGGAGTAGAGGATTGTGTCTTGTTCCAGTGTCGTGCACACTGCAAGTTGGCAGCGATAATGGAGCAGACTACTGGGCTCCCGCTCTTGGAGGGGGGTTCCGATAGGCGGAGCAATCTTCCGGTGGGAGGTTTAAGCACACGAGGAGCTTCATAAAATGATATAACATCATTAGCAGTCACTCTGCTCAAATCTAAGGCTGATTGCTCATGATGCTATATGCGGTCTTCGCTATCTGTGTGTGCTCTCTAGTTTGGGCCTGAATGTCTTTAATTAGAACACTCTGATTTAAGATCAAGACTTATAATCTATCTATGTTCTTCTTCCAAAAAA | |||||||||
gi|24104207|gb|BU893142.1|BU893142 P073H01 Populus petioles cDNA library Populus tremula cDNA 5 prime, mRNA sequence ATATAACATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GGATCATCGGTGAAAGAAAAGGAGTTGGTTCTCACTTGCTAACCAAATTTTATCAAACACTCGAAACAAAAACAAGCTTTATCATGTCTCTGATTCGATCAATGCTTAGCAACCCACTTTCCACTGACATCTGGTCACCATTTGGTTCAAGTACTAATGAGATATCAAGTTTCGCTAGCGCGCATGTTGATTGGAAGGAGACCCCGGAAGCTCATGTATTCAAGGCTGATCTTCCTGGGCTGAAGAAAGAGGAAGTGAAAGTTGAGATTGAAGAAGGAAGGGTTCTTCAGATAAGTGGAGAAAGAAGTGTTGAAAAGGAGGATAAAAACGATAAGTGGCATCGTGTCGAGAGAGGTCGTGGCGAATTCCTTAGGAGATTCTGGTTGCCTGAGAATGCTAAAGTTGATGAAGTGAAGGCATCAATGGAGAATGGGGTTTTGACTGTTACGATTCCCAAGGCCGAGGAGAAGAAGCCTGAGGTCAAGTCCATTGAGATCAGCGGCTGAGTAAATGTCTCTGTCTTGTCATCCATCGTTTTGTGATTCTGCAAAGTTAATTTTATCAATGTTTGTGATGTTATATTTCTGCGTATGATCTTTGGTATGTATCCTTTGTCTTTCTCAGAAATGCATGTTTGTGTAAACGAGATATTGTGGTAATAAAATCTGTTCTTAA | |||||||||
gi|60706357|gb|DN496167.1|DN496167 P043E05.5pR Populus petioles cDNA library Populus tremula cDNA clone P043E05 5', mRNA sequenc ATATAACATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TACGGGCCGGGTATTCAGGCTGATCTTCCTGGGCTGAAGAAGAGGGAAGTGAAAGTTGAGATTGAAGAAGGAAGGGGTTCTTCAGATAAGTGGAGAAAGAAGTGTTGAAAAGGAGGATAAAAACGATAAGTGGCATCGAGTTGAGAGAGGTCGCGGCGAGTTCCTTAGGAGGTTCTGGTTGCCTGAGAATGCTAAGTTGATGAAGTGAAGGCATCAATGGAGAATGGGGTTTTGACTGTTACGATTCCCAAGGCCGAGGAGAAGAAGCCTGAGGTCAAGTCCATTGAGATCAGCGGCTGAGTAAATGTCTCTGTCTTGTCATCCATCGTTTTGTGATTCTGCAAAGTTAATTTTATCAATGTTTGTGATGTTATATTTCTGCGTATGATCTTTGGTGTGTATCCTTTGTCTTTCTCAGAAAATGCATGTTTGTGTAAACGAGATATATTTGTGGTAATAAAAATCTGTTTTTAATT | |||||||||