| mature miRNA: GGAAAGTGAATTCCTGGAATG species: Populus tremula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|38590948|gb|CK106623.1|CK106623 UB27CPB04.5pR Populus active cambium cDNA library Populus tremula cDNA clone UB27CPB04 5', mR GGAAAGTGAATTCCTGGAATG EST sequence (targeted fragment marked with yellow): GCGGGGAAAGGAATCAAACTTCACTTCTCTCCCATTCTTTGAATTCAATTTCCAGTTTTGCAGCTTCAGCTCTTTGTTCTGATCTTCAATTTCAATCCTCCTCCAATAAGTACCCCAGAAAGCAAAAGAAAATTAGAAGAGAAATTAACCCCTCTTATCAATTATGGCATCGTTTTGATGAAGCGTTCAGCTTATGTGAACATCATTAGGGAGCACCTCATTGACTGACTTTGCTTCCATGGACAGCTTAATCACCAATCTTGATGATCTTTGCAGTACTTCCAGCTCCTGTATTACTGCTGACTACATCAAGAGCTGAATCAACAGAATTCGAGTCCCTTTAGATCAATCAGAGCAGCCACAACCCAAGCTGCAGAGTCAATCTAGCATCGAACCCAAGCCTCAAGCCTCACCAAAGTCTCCAAGCACTCTAAGCCAGAGAAAACCATCCATGATCAAGAACATCGCAATTCCTCCACCAGCAACCTTGAACATGACCCCAAAAGCAGTACAGCCAGTGGTGAACA | |||||||||
gi|23983672|gb|BU819662.1|BU819662 UA46BPA11 Populus tremula cambium cDNA library Populus tremula cDNA 5 prime, mRNA sequence GGAAAGTGAATTCCTGGAATG EST sequence (targeted fragment marked with yellow): CGGCCTTATGGCCAGGGGTTCTTTTATCAGGGGAAGTCCTCAAGTGACAACTAAGATATTGACAAGAATGTCAGGATGTATCTGGCTCGTTGTGGGAATTCATTTTTCATTGAAGATTGGCAGGTAGTAGAGAACTGACTGTGCATCTAAAACACCCATGAATTCTGTGCCAGTGGAAGTTTGCGGTGGCACGGATGTTCCATTCTGTGAAGTAAAGAGATGTATATGGATTTTTAATGGGATTTGTAATTGAACCGCTGTACCCACAGTGAAGTCTATCTATCATCACAGCGAGATTTATATGGTTTTTTAATGGGATTTGTACATATTTGACCTGGTTTGTTAAGAAAATACGAGGATTTGGATC | |||||||||
gi|38588240|gb|CK103915.1|CK103915 I004P88.5pR Populus senescing leaves cDNA library Populus tremula cDNA clone I004P88 5', mRNA GGAAAGTGAATTCCTGGAATG EST sequence (targeted fragment marked with yellow): TTTGATTTAATCTTCCCAATAATTTATCAAGTTTATTTTACAAAAGATAAGATGACTAAAAGTGATACTTCAGTTCAAGTTGGTTGGTTAAAAGCACTTGAAAGTTTACCTGAAAGGAAAGATGGAAAAGGACCAATTCCTGCTTTCTTTTTTGCACATGGACATCCAGGAATTTATTTTCCATCAGAACAACCTGGTAGACCCGGTCTCCAAGGAGTGATGGACCATTGAATCAATTTCTCAGAGACTTTGGTCCTGCTTTATTACGTAAATATAATCCATCTGCAATTGTGACCTTTTCAGCTCATTGGGAAGCAAAGGGTGAAATGCTAGTGACCGATTATGGAAACGACCAACCTTTACTCTACGATTACTACGGATTCCCTGATCATTTATACCACAAAATGGCATTCAAATGGATCAAGTGAGATCTCATCACACGTAGTTTCCACTCTAAAGTCAGCAGGAATTCCAGCTAGGACTACTACT | |||||||||
gi|60697033|gb|DN487363.1|DN487363 Q023G06.3pR Populus dormant bud cDNA library Populus tremula cDNA clone Q023G06 3', mRNA sequ GGAAAGTGAATTCCTGGAATG EST sequence (targeted fragment marked with yellow): ATCGGTTGGATGTCATCGGACCAGAACCGCGCTCTGGTTGATGCCCCAGGATATGGTGAGGAGCCAAATGAACTTCAAGAGAATCTCACTCACCGATATCAAGATTGATATCAACCGGGTTCCAAAGAAGAAGGCTTTGATTGAAGCCATGGAGAAGGCTGATGTTAAGAACAAGTGGGAGAATAGCTCTTGGGGCAGAAGGCTGATTGTTCAGAAGAGAAGGGCAGCTCTCAATGACTTCGATCGGTTCAAGTTGATGTTGGCTAAGATCAAGAGGGGTGGATTGATCAGGCAAGAACTTGCGAAGCTGAAGAAAGAAAGTGCTGCTTAAGAGTAATCTGTATAACGACGTCCAATTTTGTTATCAACATGAAGCAAGTTGTTTTGGGATGTTTTTTTAGTTGGTTTTTTATGGACTCCCAGATTATGAGAAGTTTAAGGCCTTGTTTGTTTCCAGGAATTCACTTTCCTGGAAACCATTTTCCTCACTTTCCCATGTTTGGCAATACATGGAAAGTGAGTCAAAGGAAATGTAATTTCAGTCAAAGGAAAATATTAAGCTTAACATAAGGAAAGTGTTTTCCG | |||||||||
gi|24050054|gb|BU863994.1|BU863994 S035A08 Populus imbibed seed cDNA library Populus tremula cDNA 5 prime, mRNA sequence GGAAAGTGAATTCCTGGAATG EST sequence (targeted fragment marked with yellow): AACCTTCACTTCTCTCCCATTCTTTGAATTCAATTTCCAGTATTGCAGCTTCAGCTCTTTACTTCTGATCTTAGATTTCAATCCTCCTCCAACAAGTACCCCAGAAAGCAAAAGAAAATTAGAAGAGAAATTAACCCCTCTTATCAATTATGGCATCTTTTGATGAAGCTTCAGCTTTGGAACTCATTAGGGAGCACCTCTTGACTGACTTTGCTTCCATGGACAGCTTAATCACCAATCTTGATGATCTTTGCAGTACTTCCAGCTCCTGTATTACTGCTGACTACATCAAGACTGAATCAACAGAATTCGATCCCTTTGATCAATCAGAGCAGCCACAACCCAAGCTGCAGAGTCAATCTAGCATCGAACCCAAGCCTCAAGCCTCACCAAAGTCTCCAA | |||||||||
gi|24100414|gb|BU889349.1|BU889349 P019G02 Populus petioles cDNA library Populus tremula cDNA 5 prime, mRNA sequence GGAAAGTGAATTCCTGGAATG EST sequence (targeted fragment marked with yellow): CCCAGCATGCCTTTCAAGAGATACGTGGAGATCGGGAGGGTAGGTCTCGTCAACTATGGCAAAGAATACGGCAGGATCGTTGTGATCGTTGATGTCATCGACCAGAACCGCGCTCTGGTTGATGCCCCAGATATGGTGAGGAGCCAAATGAACTTCAAGAGAATCTCACTCACCGATATCAAGATTGATATCAACCGGGTTCCAAAGAAGAAGGCTTTGATTGAAGCCATGGAGAAGGCTGATGTTAAGAACAAGTGGGAGAATAGCTCTTGGGGCAGAAGGCTGATTGTTCAGAAGAGAAGGGCAGCTCTCAATGACTTCGATCGGTTCAAGTTGATGTTGGCTAAGATCAAGAGGGGTGGATTGATCAGGCAAGAACTTGCGAAGCTGAAGAAAGAAAGTGCTGCTTAAGAGTAATCTGTATAACGACGTCCAATTTTGTTATCAACATGAAGCAAGTTGTTTTGGGATGTTTTTTTAGTTGGTTTTTTATGGACTCCCAGATTATGAGAAGTTTAAGGCCTTGTTTGTTTCCAGGAATTCACTTTCCTGGAAACCATTTTCCTCACTTTCCCA | |||||||||
gi|38599914|gb|CK115589.1|CK115589 Y011H02 Populus infected leaf substracted cDNA library Populus tremula cDNA clone Y011H02 5', GGAAAGTGAATTCCTGGAATG EST sequence (targeted fragment marked with yellow): ACGGCCGGGGAAGGAAATCAAACCTTCACTTCTCTCCCATTCTTTGAATTCAATTTCCAGTTTTGCAGCTTCAGCTCTTTACTTCTGATCTTAGATTTCAATCCTCCTCCAATAAGTACCCCAGAAAACAAAAGAAAATTAGAAGAGAAATTAACCCCTCTTATCAATTATGGCATCTTTTGATGAAGCTTCAGCTTTGGAACTCATTAGGGAGCACCTCTTGACTGACTTTGCTTCCATGGACAGCTTAATCGCCAATCTTGATGATCTTTGCAGTACTTCCAGCTCCTGTATTACTGCTGACTACATCAAGACCGAATCAACAGAATTCGATCCCTTGGATCAATCAGAGCAGCCACAACCCAAGCTGCAGAGTCAATCTAGCATCGAATCCAAGCCTCAAGCCTCACCAAAGTCTCCAAGCACTCTAAGCCAGAGAAAACCATCCATGATCAAGAACATCGCAATTCCTCCACCAGCAACCTTGAACATGACCCCACAAGCAGTACAGCCAGTGGTGAACAAGGCAGATGTTTCAAGTGAACAAGAAAGGCATTACAGGGGCGTNAGGCGTAGGCCATGGGGCAAATATGCAGCTGAGATCCGTGACCCTAACAAAAAGGGAGCTCGTGTA | |||||||||
gi|60707169|gb|DN496979.1|DN496979 Q023G06.5pR Populus dormant bud cDNA library Populus tremula cDNA clone Q023G06 5', mRNA sequ GGAAAGTGAATTCCTGGAATG EST sequence (targeted fragment marked with yellow): GGTCATTTCTGCGTCTTCCTTAGCCGTCCGCCTCCCCCCTGCTTTCACAGTGACGCACACCTCAAGAACCCAGCATGCCTTTCAAGAGATACGTGGAGATCGGGAGGGTAGGTCTCGTCAACTATGGCAAAGAATACGGCAGGATCGTTGTGATCGTTGATGTCATCGACCAGAACCGCGCTCTGGTTGATGCCCCAGATATGGTGAGGAGCCAAATGAACTTCAAGAGAATCTCACTCACCGATATCAAGATTGATATCAACCGGGTTCCAAAGAAGAAGGCTTTGATTGAAGCCATGGAGAAGGCTGATGTTAAGAACAAGTGGGAGAATAGCTCTTGGGGCAGAAGGCTGATTGTTCAGAAGAGAAGGGCAGCTCTCAATGACTTCGATCGGTTCAAGTTGATGTTGGCTAAGATCAAGAGGGGTGGATTGATCAGGCAAGAACTTGCGAAGCTGAAGAAAGAAAGTGCTGCTTAAGAGTAATCTGTATAACGACGTCCAATTTTGTTATCAACATGAAGCAAGTTGTTTTGGGATGTTTTTTTAGTTGGTTTTTTATGGACTCCCAGATTATGAGAAGTTTAAGGCCTTGTTTGTTTCCAGGAATTCACTTTCCTGGAAACCATTTTCCTCCCTTTCCCATGTTTGGCCATACATGGAAAGTGA | |||||||||