| mature miRNA: TTTGGATTGAAGGGAGCTCTA species: Populus tremula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|24100420|gb|BU889355.1|BU889355 P019G08 Populus petioles cDNA library Populus tremula cDNA 5 prime, mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GGGTTGTGGTTCCAAATTTTCTTCTCGCAGAACAGTTTTTGACGGACCATCTAATACAGAAACTAATACAGGTGGGTAACCAACCTTATGAGGTGCTAAACATCATACAGATTCTGCCTGGTTCTAGAAGAAACATGGAAAATGCTCTGCCAAGTGTGCATGTCATGTACAAGAAACCTAGAAAATACCCCTACTCTTCAGTTCAATTTCTGGAAAAATAAATGCCAGATAACCGTATTTATATGGCAGCTAACTATAGGGATTCCTTCAATCCTAATCATCAACTTCCA | |||||||||
gi|23986720|gb|BU820932.1|BU820932 UB16CPG02 Populus tremula cambium cDNA library Populus tremula cDNA 5 prime, mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TGAAGGGTGTTAGGCACCTACTTGTTCAGAAATCAATCCCCAATGGATTGGTTTTTGTCGGGGAATTGCCTTATGGACCTAAAGGTTCCTTTAGTCCAAAGATGGATCACCTGGTCTGTTTCTTGCCAGGAACACTTGCTCTTGGTGCCACCAAGGGTCTCACAAAGGAGAAGGCAATGAAAGAAAACTTGCTCAAATTTGAGGACCTTGAAAATTTGAAGCTTGCAGAAGATTTAGCCAAAACATGCTTTGAGATGTATTCAGCAACTTCCACTGGGCTTGCCCCAGAAATCGCTTACTTCCATACTGAGGTTGGTTGAATTTGGATGATATGTTCCCTGAACGCAGTTTTCTAAACCATCAATGCACCATAGAGGATCATTTTCCTCCCCACTTACTGCAAGCTGTTGACTCTTTG | |||||||||
gi|24101912|gb|BU890847.1|BU890847 P042E06 Populus petioles cDNA library Populus tremula cDNA 5 prime, mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GGATTGGATTGGAGGGATTTTATGGACCATCGGCTCCTGATAGGGCTCAGTTCAATCCAAACTCATATGCTACGCAAGTTGGAACCGACTTTATCAGGAACCATCAGGTTCTTGGTGTTGATTTTGCTTCTGTTCACATATATGCAGACTCCTGGATTTCGCAAACAATTACGGATTCTCATATCCAATTCACCAAGTCATGGATGGAAGCTCACATAGAGGATGCTGAGAAATATCTGGGAATGCCGGTTGTGTTCGCTGAGTTTGGTGTATCTTCAAAAGATCCTGGATACAACTCATCATTCCGCGACACACTAATTAACACAGTGTACAAGACCCTCTTGAACTCAACCAAGAGAGGTGGGAGTGGAGCTGGGAGCCTTCTGTGGCAGCTTTTCCCTGACGGGACAGACTACATGGATGATGGATATGCAATTGTTCTATCAAAATCTCCTTCCACATCAAACATCATTTCCCTCCATTCAACACGAGTCGCAATCGTCAATTCCATGTGTTCGTGGAAATGCAAATGGGGCTGCAAGAAGAGGAA | |||||||||
gi|60697344|gb|DN487644.1|DN487644 Q056H09.3pR Populus dormant bud cDNA library Populus tremula cDNA clone Q056H09 3', mRNA sequ TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TTTTTTTAAAAAAAAAGGAAAATCTCAAAGCAAAACTGGAGAAGGAAAAGGGGAAAAAAGTTCCCTTTAATTCAAACCGGAGCCCCCCACAGGAGTTTTTTTTGCCGGTTCCTTTTGGGAAACAAATTTAAACAATTTTTCCCTCCCTTTTTTTTTTTTTTTTAATCTTTTTTAAATTTATCAGCTCGGAAAGTGCCTGGAGACTTAATTGTACTGCGACACACGTTGGGATTTTTACTTGCTTCCTCATCTTCTGTGTAACAGTGAGTTAAATTGTTTTCCGTCTTAGCTAATATGTTGTTTTCTTTACTTTCTTTCTTTAATTGTACATAGTGTAATATTG | |||||||||
gi|60706696|gb|DN496506.1|DN496506 P073C03.5pR Populus petioles cDNA library Populus tremula cDNA clone P073C03 5', mRNA sequenc TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TACCATGTTGTCCGAGAAATAGCATATTTAATGCCTGCTAGCAGCTGGAGGAGGATATGCGCAGATCCCAACCTTCAAACGTCTGTAATTACTTACTGGCTGGCTGGCTGGCAGGAGCTCCCTTCAATTCAGCTGGCTTTGCTCAATTCCTTATGTTATCTCGCCATTATTCTGTGCTGTTTGAAGGTGTCATGAGCAGCTGGTGAACAGCAACCCCATGATCTGTATAGTCATTTCTCTTGGGGTAGTAAGTATCCCCCTGACTTGTCGAGAAGTTAATAGAATAACTCGAAACCTTGAACAAAGGCTCTGTAAACTCTGCCGTTGTAGAATGAGAGT | |||||||||