miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: ATCAATGGCCATTGTAAGAGT
species: Populus tremula x Populus alba
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|163672355|gb|CU307631.1|CU307631 CU307631 LG0ADM Populus tremula x Populus alba cDNA clone LG0ADM7YN14ZM1, mRNA sequence 

ATCAATGGCCATTGTAAGAGT
|||||||||||.|||||||.|
TAGTTACCGGTGACATTCTTA

EST sequence (targeted fragment marked with yellow):
TGGGGAAAGAAAGAAAGAAAGAGAGACGGAGCAGAGAGAGAGATCTGAGGCGCTTGTTGCAGAAAGGGAGAGAGAAACAGAGAAAGATCAACCATGAGATCTAGCAATCACTTGATAGGGGTACTCAACTTCCTGACTTTTTTGCTATCAATCCCCATCCTAGGAGGTGGTATATGGCTAAGCAGCAGAGCCAACAACACAGATTGTCTGAAATTCTTACAGTGGCCATTGATAATAATTGGGATCTCAATCATGGTCGTTTCTTTAGCCGGTTTCGCTGGCGCGTGTTATCGAAACGCTTTCTTGATGTGGGTTTACCTATTTGTTATGTTCTTCATCATCGCCCCGCTTTTAGGTTTCATCGTCTTTGCCT


gi|33448475|gb|CF229046.1|CF229046 PtaXM0020E3E0309 Poplar cDNA library from mature xylem Populus tremula x Populus alba cDNA 5' 

ATCAATGGCCATTGTAAGAGT
|||| ||||||.||| |||.|
TAGTGACCGGTGACACTCTTA

EST sequence (targeted fragment marked with yellow):
GAAAAACGTTATATCTTTGCCTTTGTTGCTATCAATTCTCTTCTTCACCTTGTAACTGGCCACCCCAAAAATTAACAGTAAAGAAAGAAAGAAAGAAAGAAAGAGAGACGGAGCAGAGAGAGAGATCTGACGCGCTTGTTGCAGAAAGGGAGAGAGAAACAGAGAAAGATCAACCATGAGATCTAGCAATCACTTGATAGGGGTACTCAACTTCCTGACTTTTTTGCTATCAATCCCCATCCTAGGAGGTGGTATATGGCTAAGCAGCAGAGCCAACAACACAGATTGTCTGAAATTCTCACAGTGGCCAGTGATAATAATTGGGATCTCAATCATGGTCGTTTCTTTAGCCGGTTTCGCTGGCGCGTGTTATCGAAACACTTTCTTGATGTGGGCTTACCTATTTGTTATGTTCTTCATCATCGCCGCGCTTTTAGGTTTCATCATCTTTGCCTATGTTGTCACCGATAAAGGGTCGGGCCGCCCAGTCCCGAATCGTGCGTACTCTGACTATTATCTGCAGGACTATTCAGGGTGGTTGAAGGATCGAGTAGCTAGTGATAGCTACTGGCGCAAGATTAGCTCTTGTATACCAGATTCTAAGGTTTGTGCTAAGATGGGGAGACCTTTTAATGGTGGCGTCCCTGANACTGCA


gi|163660574|gb|CU308817.1|CU308817 CU308817 LG0ADM Populus tremula x Populus alba cDNA clone LG0ADM14YB21ZM1, mRNA sequence 

ATCAATGGCCATTGTAAGAGT
|||||||||||.|||||||.|
TAGTTACCGGTGACATTCTTA

EST sequence (targeted fragment marked with yellow):
GAAAGAAAGAAAGAAAGAGAGACGGAGCAGAGAGAGAGATCTGACGCGCTTGTTGCAGAAAGGGAGAGAGAAACAGAGAAAGATCAACCATGAGATCTAGCAATCACTTGATAGGGGTACTCAACTTCCTGACTTTTTTGCTATCAATCCCCATCCTAGGAGGTGGTATATGGCTAAGCAGCAGAGCCAACAACACAGATTGTCTGAAATTCTTACAGTGGCCATTGATAATAATTGGGATCTCAA


gi|33449966|gb|CF230537.1|CF230537 PtaC0009E7E0709 Poplar cDNA library from cambial zone Populus tremula x Populus alba cDNA 5', 

ATCAATGGCCATTGTAAGAGT
|||||||| ||.|||||||||
TAGTTACCCGTGACATTCTCA

EST sequence (targeted fragment marked with yellow):
CAGTAATCTGGAGAGAAACCTTCGCAGATGAGATGACAGGGCGGCGACAAGCGTTTTTAGGGTTTCTGCCGCCGCTTTTCGCTTACAACAATAAATAGGTGGGTGGACATTGTTTGCAGAGACATTGGGATGGTTTTAAAATTTAGTTAAAATATAATGGGCAGCAAAGGTTACTCTTCTGGCTTTCATAGTTATAACATCTTGATCAATGGCCATTGTAAGAGTAGAAGGATCCATGAAGCAATAACTCTCTTTGCTAAAATGTGTGATAAAACATTGACTCCTGGTATTTCACTCTTACAGTGCCCATTGATTAAGATGGTATAATGTTGTTACNAAGGGATGGATTTCTTCTCNAAAACTGCACCTCACACGTTGTACCATATCTCAACGACAAGGTTGATAGANGATCTTTGTGCATTCATCCACGGTAAGNATGCTAATGGATCTCTCGTCCGATGGCAAAATTATAATGTGTTTCTATGANGAGATTCTCGAAATGGGGATTTCAATTGAAGTATCATTTTCAGCTCAGCAATGCTGTGGAGGTCTTCCTTCAAAGCAGTTAGGCTGCAATAACTCATGTAAGTTATTGTTACCCAATTTGTCCNCCTTAANAACGGGANAATCTACTATTTCCTCTTCATATGGTGATGTGTCTTGGCTATAGGTCCTGCTGTNT