miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CAAGATCATCCCTCATGCTGT
species: Populus tremula x Populus alba
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|33453605|gb|CF234176.1|CF234176 PtaJXO3D6D0608 Poplar cDNA library from young opposite xylem Populus tremula x Populus alba c 

CAAGATCATCCCTCATGCTGT
||||||||||| ||||. ..|
GTTCTAGTAGGTAGTATAGTA

EST sequence (targeted fragment marked with yellow):
CTCAAAGTATGAAGAGTTGAAGACCCCATCAGTGGTTCCTGCTGTACCCGAACCTGCGTTGATTCCTGTTGCTGTTGAGCCTGATTCACCCATTCATGCCAAAGAAGATGCCTTGATCAGGAAACCTGCAGGTCCACAAGGTGGAACCCACGGAGGGAGCAGTGATGATATGATGGATGATCTTGATGAAATGATATTTGGTAAGAAGGGAGGGAGTGCATCTGAAGGTGCGCAAGACCCAAAGAAGCAGCAATTCTCTAAGGATGACCTCATATCCCTCTGAGCTACGTTCTGTACACAGATGATTCCATATTTTAGGAGGTAGGGCTTTTGATACGAGGCCATTTAGGTTCTGAACACAATTGAATTTGAATTGAATTTAAATGGTTATTGCATTCATAGAAGGTGGGTTGTGGCCTCCCTTTGCACAGTACTTTCATTGTTTTATGTGTATTTTTCTGTCTTCTGCAAGTAGTTTATGAATGGATTTTGCTCCCN