miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CCAGACCCAATAGCCTTGGAT
species: Populus tremula x Populus alba
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|163672705|gb|CU308205.1|CU308205 CU308205 LG0ADM Populus tremula x Populus alba cDNA clone LG0ADM14YB12ZM1, mRNA sequence

CCAGACCCAATAGCCTTGGAT
|||.|||||||| ||||||
GGTTTGGGTTATAATAACCTA

EST sequence (targeted fragment marked with yellow):
TACGTGCTAGACATTAAGCCTTATGATAAATAGTTCTTAACTAGTCACATAACCCGCGTGATATTACGGGTTAATTTTTTTATATATATAAAATACCAAAAAAAAACTAAAATCTAAGTGTTAGGTTTTTCTGTAAAGCTATATCCAATAATATTGGGTTTGGCTATAACATCTTACCTAAAAGTAATATTTATAATAGTAATAATAATATTAAACTTGCATGACCTAGTAGGTCTAGCTCCAATACCAGACCCAATAGCCTTGGATGCGGATCTGACTGCAAGGTCATGTCATAAAAGTGTGATAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA