| mature miRNA: CCTGGTCATTTTGTTTATAGG species: Populus tremula x Populus alba database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|33450523|gb|CF231094.1|CF231094 PtaC0017C12C1206 Poplar cDNA library from cambial zone Populus tremula x Populus alba cDNA 5' CCTGGTCATTTTGTTTATAGG EST sequence (targeted fragment marked with yellow): GNAAACCATCAGCTACAAGCGCAAATCACTCGAAGCAGAAGCTTACTCATTTTAATTACTCTGTTGTGATTTTGATCTTTTCTTGATTAAGTTAATATTGTGATTCTGATCAGTATGGCCGAGGAAAACAAGAGCCATGAGTATGAGACCAAAGTTGGTGAAGAGAGTGGTGCTGTTGAGACCAAGGATCGCGGGTTGTTTGATTTCCTGGGGAAGAAAGAAGAAGAGAAGCCTAAAGAGGAGGTGATTGTTACTGAATTTGAAGAGAAACTTCAGGTTTCTGAACCCGAGACCAAAGTAGAGGAAGAGCACAAGAAAAAAGAGGAAGAGGAGAAGAAACCTACTCTCTTTGAGAAACTCCATCGATCAGGCAGCAGTTCCAGCTCTTCTAGTGACGAGGAGGAAGGCGACGATGAAGAGAAGAAAAAGAAGAAGAAGGAAAAGAAGTCATTGAAAGAGAAGATGAAGATATCANGAGAGAAAGGAGAGGAGAAGGAACACNAGGATACTAGTGTTCCTGTTGAGGTAGTCCACACAGAGACACCCCNTGAACCAGAGGAGAANAANGGTTTCCTTGACAAAATCAAGGAGAAATTGCCNGGACATAAAAAAGCTGACGAGGTACCTNTTCCTCCTCCTCCTCCAGCTCCTGAACATGTTTTCCCCTGNANCTGCANTTTCCCTGTGAAGGAAATGCCCAGGAAAAAAAAGGGCTCCCCCNA | |||||||||
gi|33450481|gb|CF231052.1|CF231052 PtaC0016G1G0113 Poplar cDNA library from cambial zone Populus tremula x Populus alba cDNA 5', CCTGGTCATTTTGTTTATAGG EST sequence (targeted fragment marked with yellow): AAACCATCAGCTACTAGCGCAAATCACTCGAAGCAGAAGCTTACTCATTTTAATTACTCTGTTGTGATTTTGATCTTTTCTTGATTAAGTTCATATTGTGATTCTGATCAGTATGGCTGAGGAAAACAAGAGCCATGAGTATGAGACCAAAGTTGGTGAAGAGAGTGGTGCTGTTGAGACCAAGGATCGCGGGTTGTTTGATTTCCTGGGGAAGAAAGAAGAAGAGAAGCCTCAAGAGGAGGTGATTGTTACTGAATTTGAAGAGAAACTTCAGGTTTCTGAACCCGAGACCAAAGTAGAGGAAGAGCACAAGAAAAAAGAGGAAGAGGAGAAGAAACCTACTCTCTTTGAGAAACTCCATCGATCAGGCAGCAGTTCCAGCTCTTCTAGTGACGAGGAGGAAGGCGACGATGAAGAGAAAAAGAAGAAGAAGAAGGAAAAGAAGTCATTGAAAGAGAAGATGAAGATATCAGGAGAGAAAAGAGAGGAGAAGGAACACGAGGATACTAGTGTTCCCGTTGAGGTAGTCCATACAGAGACACCCCATGAACCANAGGAGAAGAAGGGTTTCCTTGACCAAATCAAGGAGAAATTGCCNGGACATAANAAAGCTGACGAGGTACCTNCTCCTCCTCCAGCTCCTGAACATGTTTCCCCTGAAGCTGCANTTTCCTGTGAAGGAAATGCCCAGGAAAAAAAGGGATNCTCCAAAAAATCA | |||||||||