miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TCCAAAGGGATCGCATTGATC
species: Populus tremula x Populus alba
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|33451326|gb|CF231897.1|CF231897 PtaC0027B11B1103 Poplar cDNA library from cambial zone Populus tremula x Populus alba cDNA 5' 

TCCAAAGGGATCGCATTGATC
||| |||||||||||| ||||
AGGATTCCCTAGCGTA-CTAG

EST sequence (targeted fragment marked with yellow):
GGGGCCTTTCCGTGTGCTGCTCCAAGAGCAATTTACATGGAAAACCTACAACAGCTCNTCAGTTGTTATCAAATCCTTAGTGCAGTTGGAGTGTTCCAAAGGGATCGCATTGATCTAATGACTTTCGATGTCTATATGATGTTAATGTTTAGTCATTTCATTGGATCATGCGATCCCTTAGGAATTTTCCAGCAAATAGCTCTAAATTTTCACCACCCTTTAAAGAATATGTATCTTCTCATCGACAGCTTTGGCCGTCGGCAATCACTTGATTAATCAGTTTCTATGCAAAAAATGGATCAGTTTGCTTCCCTTGTTCCAGTCAATGTAAAAGTATTTCCCACACCAGAAATTAAGGTCCTCATCTTTCAATTGCAGTATATAGTTTATTTCTCAAGGGAAATTATGAATGTCAACTGTTAAGTTCTCCATGTTAAGCTTGTATATTTGACAGACATGTTATTTTTTTAGGGTTAATGAATCCTTTATTCTGGTTATGCCN