| mature miRNA: TGTGTTCTCAGGTCGCCCCT species: Populus tremula x Populus alba database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|33451015|gb|CF231586.1|CF231586 PtaC0023C1C0105 Poplar cDNA library from cambial zone Populus tremula x Populus alba cDNA 5', TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): GGCCGGGGACTCTCCTTCACTCTCAAACTCAACAAACAAACATANTGTCTCTCTCCCTCTCTCTCTCTAAGGGGTGCTCTGAGATCACATAGAACAATGGTGAAGGCTGTAGCTGTTCTTAATAGCAGTGAAGGTGTGAGTGGCACCATCTTCTTTACCCAAGAAGGAGATGGCCCAACTACTGTAACTGGAAACCTTTCTGGTNTTAAGCCAGGCCTTCATGGCTTCCACGTCCATGCCCCTGGAGACACCACAAATGGCTGCATGTCAACTGGGCCGCATTTTAATCCTGTAGGCAAGGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATCTGGGAAATGTCACTGTTGGTGATGATGGCACTGCTACTTTCACAATCATTGACAAACAGATTCCTCTTACTGGACCACATTCCATTATTGGGAAGGGGCTGTTGTTGTTCATGGAGATCCTGATGATCTTGGGCAAGGGAGGACATGAACTCAGCAAAACCACCGGTNATGCTGGGTGGCAAANTANCATGCCGTATTATTGGTCTGCAAGGTTGAACTGCTTCACTCTGCNACANCCACCGCCNTAGTCTNCTGAAAATGCAGTCCCAAAANTNTCAACCCTTTTANNNAAAAAAAA | |||||||||
gi|33448046|gb|CF228617.1|CF228617 PtaXM0015C7C0705 Poplar cDNA library from mature xylem Populus tremula x Populus alba cDNA 5' TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): GGGGCACTCTTCACTAGTTCACTCTCTAACACGACAAACGTACTCTCTCTTTCTCTCTCTACTCTCGAAGGGGCGCTCTGAGATCACATAGAACAATGGTGAAGGCTGTTGCTGTTCTGAATAGCAGTGAAGGTGTCAAAGGCACCATCAACTTTACCCAAGAAGGAGATGGTCCAACTACTGTAACTGGAAGCCTCTGTGGTCTTAAGCCAGGCCTTCATGGCTTCCATGTTCATGCCCTTGGAGACACCACAAATGGCTGCATGTCAACTGGCCCACATTTTAATCCTGTAGGCAAAGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATTTGGGAAATGTCACTGTTGGTGATGATGGCACCGCTACTGTCTCAATCATTGACAACCAGATTCCTCTTACTGGACCAAATTCCATTGTTGGAAGGGCTGTTGTTGTTCATGCAGATCCTGATGATCTTGGCAAGGGAGGACATGAACTTANCAAAAGCACTGGTAATGCTGGTGGCAGAGTANCATGTGGTGTTATTGGTTTGCAAGGCTGAACCACCTCACTCCACCATAGTTTGTAAACAAATGCAGTTGCATATGTATCAACCCGCAGCTACAGAGGTTTCTGATAGACTCTGAATAAANGATGAAAACCTACTGTTGTACTGTTTTGGGGGATTGGTTGTGTAATCTAAAANTGTGTTCTGTNCNACCTCTTAAACTGAAAGTTTCANCANCTTGGGTTCCTTAATTGAATGGCTCCTATTTTACG | |||||||||
gi|33455478|gb|CF236049.1|CF236049 PtaJXT0030A7A0701 Poplar cDNA library from young tension xylem Populus tremula x Populus alba TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): CGGGGCACTCACTCTTCACTGGTTCACTCTCTAACACGACAAACAAGCATACTCTCTCTTTCTCTCTCTACTCTCGAAGGGGCGCTCTGAGATCACATAGAACAATGGTGAAGGCTGTTGCTGCTCTGAATAGCAGTGAAGGTGTCAAAGGCACCATCAACTTTACCCAAGAAGGAGATGGTCCAACTACTGTAACTGGAAGCCTCTGTGGTCTTAAGCCAGGCCTTCATGGCTTCCATGTTCATGCCCTTGGAGACACCACAAATGGCTGCATGTCAACTGGCCCGCATTTTAATCCTGTAGGCAAAGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATTTGGGAAATGTCACTGTTGGTGATGATGGCACCGCTACTGTCTCAATCATTGACAACCAGATTCCTCTCACTGGACCAAATTCCATCGTTGGAAGGGCTGTTGTTGTTCATGCAGATCCTGATGATCTTTGGCAAGGGGAGGACATGAACTTAGCAAAAGCACTGGTAATGCTGGTGGCAGANTANCATGTGGGGGTATTGGTTTGCAAGGCTGAACTACCCNCCT | |||||||||
gi|33450579|gb|CF231150.1|CF231150 PtaC0018A3A0301 Poplar cDNA library from cambial zone Populus tremula x Populus alba cDNA 5', TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): ACTCTTCACTGGTTCACTCTCTAACACGACAAACAAGCATACTCTCTCTTTCTCTCTCTACTCTCGAAGGGGCGCTCTGAGAACAATGGTGAAGGCTGTTGCTGTTCTGAATAGCAGTGAAGGTGTCAAAGGCACCATCAACTTTACCCAAGAAGGAGATGGTCCAACTACTGTAACTGGAAGCCTCTGTGGTCTTAAGCCAGGCCTTCATGGCTTCCATGTTCATGCCCTTGGAGACACCACAAATGGCTGCATGTCAACTGGCCCGCATTTTAATCCTGTAGGCAAAGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATTTGGGAAATGTCACTGTTGGTGATGATGGCACCGCTACTGTCTCAATCATTGACAACCAGATTCCTCTCACTGGACCAAATTCCATCGTTGGAAGGGCTGTTGTTGTTCATGCAGATCCTGATGATCTTGGCAAGGGAGGACATGAACTTAGCAAAAGCACTGGTAATGCTGGTGGCAGAGTAGCATGTGGTGTTATTGGTTTGCAAGGCTGAACTACCGCACTCCACCATAGTTTGTTAATAAATGCAGTTGCATATGTATCAACCCGCAGCTACAGAGGTTTCTGATANACTCTGAATAAAAGGATGAAAACCTACTGTTGTACTGTTTTGGTGGATTGGTTGTGTAATCTAAAAGTGTGTTCTGTTTGACCTCTTANAAAAAA | |||||||||
gi|33455053|gb|CF235624.1|CF235624 PtaJXT0025A7A0701 Poplar cDNA library from young tension xylem Populus tremula x Populus alba TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): GAACTCTTCACTGGTTCACTCTCTAACACGACAAACAAGCATACTCTCTCTTTCTCTCTCTACTCTCGAAGGGGCGCTCTGAGATCACATAGAACAATGGTGAAGGCTGTTGCTGTTCTGAATAGCAGTGAAGGTGTCAAAGGCACCATCAACTTTACCCAAGAAGGAGATGGTCCAACTACTGTAACTGGAAGCCTCTGTGGTCTTAAGCCAGGCCTTCATGGCTTCCATGTTCATGCCCTTGGAGACACCACAAATGGCTGCATGTCAACTGGCCCGCATTTTAATCCTGTAGGCAAAGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATTTGGGAAATGTCACTGTTGGTGATGATGGCACCGCTACTGTCTCAATCATTGACAACCAGATTCCTCTCACTGGACCAAATTCCATCGTTGGAAGGGCTGTTGTTGTTCATGCAGATCCTGATGATCTTGGCAAGGGAGGACATGAACTTAGCAAAAGCACTGGTAATGCTGGTGGCAGAGTAGCATGTGGTGTTATTGGTTTGCAAGGCTGAACTACCGCACTCCACCATAGTTTGTTAATAAATGCAGTTGCATATGTATCAACCCGCAGCTACAGAGGTTTCTGATAGACTCTGAATAAAAGGATGAAAACCAACTGTTGTACTTTTTTGGTGGATTGGTTGTGTAATCTAAAAGTGTGTTTCGTTTGACCTCCAAAAAAAAAAAN | |||||||||
gi|33455258|gb|CF235829.1|CF235829 PtaJXT0027E5E0509 Poplar cDNA library from young tension xylem Populus tremula x Populus alba TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): GGGGAACTCTCCTTCACTCTCAAACTCAACAAACAAACATACTGTCTCTCTCCCTCTCTCTCTCTAAGGGGTGCTCTGAGATCACATAGAACAATGGTGAAGGCTGTAGCTGTTCTTAATAGCAGTGAAGGTGTGAGTGGCACCATCTTCTTTACCCAAGAAGGAGATGGCCCAACTACTGTAACTGGAAACCTTTCTGGTNTTAAGCCAGGCCTTCATGGCTTCCACGTCCATGCCCTTGGAGACACCACAAATGGCTGCATGTCAACTGGGCCGCATTTTAATCCTGTAGGCAAGGAGCATGGTGCCCCTGAGGATGANAATCGTCATGCTGGTGATCTGGGAAATGTCACTGTTGGTGATGATGGCACTGCTACTTTCACAATCATTGACAAACAGATTCCTCTTACTGGACCACATTCCATTATTGGAAGGGCTGTTGTTGTTCATGGAGATCCTGATGATCTTGGCAAGGGAGGACATGAACTCAGCAAAACCACCGGTAATGCTGGTGGCAGAGTAACATGCGGTATTATTGGTCTGCAAGGTTGAACTGCTTCACTCTGCCACAGCACCGCCATAGTCTCCTGACAATGCAGTCGCAAATATATCAACCCTCTANCATAAANANAGTTCTGATGACCANTNCTCGGTCTGAATAAAAGGTCAAACCCTANTATGCTTGTTGGG | |||||||||
gi|163672760|gb|CU307296.1|CU307296 CU307296 LG0ADM Populus tremula x Populus alba cDNA clone LG0ADM11YE22ZM1, mRNA sequence TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): GGACCCTCAAACTCAACAAACAAACACACTGTCTCTCTCCCTCTCTCTCTCTAAGGGGTGCTCTGAGATCACATAGAACAATGGTGAAGGCTGTAGCTGTTCTTAATAGCAGTGAAGGTGTGAGTGGCACCATCTTCTTTACCCAAGAAGGAGATGGCCCAACTACTGTAACTGGAAACCTTTCTGGTCTTAAGCCAGGCCTTCATGGCTTCCACGTCCATGCCCTTGGAGACACCACAAATGGCTGCATGTCAACTGGGCCGCATTTTAATCCTGTAGGCAAGGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATCTGGGAAATGTCACTGTTGGTGATGATGGCACTGCTACTTTCACAATCATTGACAAACAAATTCCTCTTACTGGACCACATTCCATTATTGGAAGGGCTGT | |||||||||
gi|33448099|gb|CF228670.1|CF228670 PtaXM0016A10A1002 Poplar cDNA library from mature xylem Populus tremula x Populus alba cDNA 5 TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): CGGGGATGCCAGGGNCTTATAACTGATTTTCTCTTGTCTCTTGACGATCGGTTTCTATATTTTGTCAACTGGCTCCATGGAGATGTCAGACAGTACAACATTGAGGACCCCAAAAATCCTGTCCTGAAAGGGCAAGTCTGGGTTGGGGGGCTGATCCAGAAAGGAAGCCCAGTAGTTGCTGAGGGTGAAGATGGAAAAACCTGGCAGTATGATGTTCCAGAAATCCAGGGACATCGATTGAGAGGAGGGCCTCAAATGATTCAGCTGAGTCTAGACGGGAAGCGGCTTTATGTCACCAACTCACTTTTCAGCACTTGGGATCGTCAGTTTTATCCANAAGTCGTGGAGAAAGGATCTCATATGTTACAGATAGATGTTGACACTGAGAAAAGGTGGTCTTGCAATAAATCCAAACTATTTTGTAGACTTTGCATCTGAACCTGATGGACCTTCCCTAGCGCATGAGATGAGATACCCAGGAGGTGACTGCACATCAGATATATGGATCTAAGCATCCTTAATGGTTTGGCAGTGAGGGGTTACCTGAGAACAGAACTTAGGAAGTAATAAATATCAATGTGTAAATTGCAATGGCATGTTGTGACACCTACTCTTCGATGGATGAGTAACTTCNTTCCTTTTAATGCTNTAATCCATCGTTTAATATCAAATGATAATTTGCAGTTTCATAATCAACATGAACTTATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|33453707|gb|CF234278.1|CF234278 PtaJXO4F11F1111 Poplar cDNA library from young opposite xylem Populus tremula x Populus alba TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): GACTCTCCTTCACCCTCAAACTCAACAAACAAACACACTGTCTCTCTCCCTCTCTCTGNNTAAGGGGCGCTCTGAGATCACATAGAACAATGGTGAAGGCTGTAGCTGTTCTTAATAGCAGTGAAGGTGTGAGTGGCGCCATCTTCTTTACCCAAGAAGGAGATGGCCCAACTACTGTAACTGGAAACCTTTCTGGTCTTAAGCCAGGCNTTCATGGCTTCCACGTCCATGCCCTTGGAGACACCACAAATGGCTGCATGTCAACTGGGCCGCATTTTAATCCTGTAGGCAAGGAGCATGGTGCCCCTGANGATGANAATCGTCATGCTGGTGATCTGGGAAATGTCACTGTTGGTGATGATGGCACTGCTACTTTCACAATCATTGACAAACAGATTCCTCTTACTGGACCACATTCCATTATTGGAAGGGCTGTTGTTGTTCATGGAGATCCTGATGATCTTGGCAAGGGAGGACATGAACTCANCAAAACCACCGGTAATGCTGGCGGCANAATANCATGCNGTATTATTGGTCTGCAAGGTTGAACTGCTTCACTCTGCCNCA | |||||||||