| mature miRNA: TGTGTTCTCAGGTCGCCCCTG species: Populus tremula x Populus alba database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|33455478|gb|CF236049.1|CF236049 PtaJXT0030A7A0701 Poplar cDNA library from young tension xylem Populus tremula x Populus alba TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): CGGGGCACTCACTCTTCACTGGTTCACTCTCTAACACGACAAACAAGCATACTCTCTCTTTCTCTCTCTACTCTCGAAGGGGCGCTCTGAGATCACATAGAACAATGGTGAAGGCTGTTGCTGCTCTGAATAGCAGTGAAGGTGTCAAAGGCACCATCAACTTTACCCAAGAAGGAGATGGTCCAACTACTGTAACTGGAAGCCTCTGTGGTCTTAAGCCAGGCCTTCATGGCTTCCATGTTCATGCCCTTGGAGACACCACAAATGGCTGCATGTCAACTGGCCCGCATTTTAATCCTGTAGGCAAAGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATTTGGGAAATGTCACTGTTGGTGATGATGGCACCGCTACTGTCTCAATCATTGACAACCAGATTCCTCTCACTGGACCAAATTCCATCGTTGGAAGGGCTGTTGTTGTTCATGCAGATCCTGATGATCTTTGGCAAGGGGAGGACATGAACTTAGCAAAAGCACTGGTAATGCTGGTGGCAGANTANCATGTGGGGGTATTGGTTTGCAAGGCTGAACTACCCNCCT | |||||||||
gi|33448099|gb|CF228670.1|CF228670 PtaXM0016A10A1002 Poplar cDNA library from mature xylem Populus tremula x Populus alba cDNA 5 TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): CGGGGATGCCAGGGNCTTATAACTGATTTTCTCTTGTCTCTTGACGATCGGTTTCTATATTTTGTCAACTGGCTCCATGGAGATGTCAGACAGTACAACATTGAGGACCCCAAAAATCCTGTCCTGAAAGGGCAAGTCTGGGTTGGGGGGCTGATCCAGAAAGGAAGCCCAGTAGTTGCTGAGGGTGAAGATGGAAAAACCTGGCAGTATGATGTTCCAGAAATCCAGGGACATCGATTGAGAGGAGGGCCTCAAATGATTCAGCTGAGTCTAGACGGGAAGCGGCTTTATGTCACCAACTCACTTTTCAGCACTTGGGATCGTCAGTTTTATCCANAAGTCGTGGAGAAAGGATCTCATATGTTACAGATAGATGTTGACACTGAGAAAAGGTGGTCTTGCAATAAATCCAAACTATTTTGTAGACTTTGCATCTGAACCTGATGGACCTTCCCTAGCGCATGAGATGAGATACCCAGGAGGTGACTGCACATCAGATATATGGATCTAAGCATCCTTAATGGTTTGGCAGTGAGGGGTTACCTGAGAACAGAACTTAGGAAGTAATAAATATCAATGTGTAAATTGCAATGGCATGTTGTGACACCTACTCTTCGATGGATGAGTAACTTCNTTCCTTTTAATGCTNTAATCCATCGTTTAATATCAAATGATAATTTGCAGTTTCATAATCAACATGAACTTATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|33448046|gb|CF228617.1|CF228617 PtaXM0015C7C0705 Poplar cDNA library from mature xylem Populus tremula x Populus alba cDNA 5' TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): GGGGCACTCTTCACTAGTTCACTCTCTAACACGACAAACGTACTCTCTCTTTCTCTCTCTACTCTCGAAGGGGCGCTCTGAGATCACATAGAACAATGGTGAAGGCTGTTGCTGTTCTGAATAGCAGTGAAGGTGTCAAAGGCACCATCAACTTTACCCAAGAAGGAGATGGTCCAACTACTGTAACTGGAAGCCTCTGTGGTCTTAAGCCAGGCCTTCATGGCTTCCATGTTCATGCCCTTGGAGACACCACAAATGGCTGCATGTCAACTGGCCCACATTTTAATCCTGTAGGCAAAGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATTTGGGAAATGTCACTGTTGGTGATGATGGCACCGCTACTGTCTCAATCATTGACAACCAGATTCCTCTTACTGGACCAAATTCCATTGTTGGAAGGGCTGTTGTTGTTCATGCAGATCCTGATGATCTTGGCAAGGGAGGACATGAACTTANCAAAAGCACTGGTAATGCTGGTGGCAGAGTANCATGTGGTGTTATTGGTTTGCAAGGCTGAACCACCTCACTCCACCATAGTTTGTAAACAAATGCAGTTGCATATGTATCAACCCGCAGCTACAGAGGTTTCTGATAGACTCTGAATAAANGATGAAAACCTACTGTTGTACTGTTTTGGGGGATTGGTTGTGTAATCTAAAANTGTGTTCTGTNCNACCTCTTAAACTGAAAGTTTCANCANCTTGGGTTCCTTAATTGAATGGCTCCTATTTTACG | |||||||||
gi|33454852|gb|CF235423.1|CF235423 PtaJXT0022F4F0412 Poplar cDNA library from young tension xylem Populus tremula x Populus alba TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): CTTCACTAGTTCACTCTCTAACACGACAAACATACTCTCTCTTTCTCTCTCTACTCTCGAAGGGGCGCTCTGAGATCACATAGAACAATGGTGAAGGCTGTTGCTGTTCTGAATAGCAGTGAAGGTGTCAAAGGCACCATCAACTTTACCCAAGAAGGAGATGGTCCAACTACTGTAACTGGAAGCCTCTGTGGTCTTAAGCCAGGCCTTCATGGCTTCCATGTTCATGCCCTTGGAGACACCACAAATGGCTGCATGTCAACTGGCCCACATTTTAATCCTGTAGGCAAAGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATTTGGGAAATGTCACTGTTGGTGATGATGGCACCGCTACTGTCTCAATCATTGACAACCAGATTCCTCTTACTGGACCAAATTCCATTGTTGGAAGGGCTGTTGTTGTTCATGCAGATCCTGATGATCTTGGCAAGGGAGGACATGAACTTAGCAAAAGCACTGGTAATGCTGGTGGCAGAGTAGCATGTGGTGTTATTGGTTTGCAAGGCTGAACCACCTCACTCCACCATAGTTTGTAAACAAATGCAGTTGCATATGTATCAACCCGCAGCTACAGAGGTTTCTGATAGACTCTGAATAAAAGGATGAAAACCTACTGTTGTACTGTTTTGGTGGATTGGTTGTGTAATCTAAAAGTGTGTTCTGTTTGACCTCTTAAACTGAANTTTTCAACAGCTTGGTTCCTTAATTGATNGGCTCCTATTTTGAAAAAAAA | |||||||||
gi|33455053|gb|CF235624.1|CF235624 PtaJXT0025A7A0701 Poplar cDNA library from young tension xylem Populus tremula x Populus alba TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): GAACTCTTCACTGGTTCACTCTCTAACACGACAAACAAGCATACTCTCTCTTTCTCTCTCTACTCTCGAAGGGGCGCTCTGAGATCACATAGAACAATGGTGAAGGCTGTTGCTGTTCTGAATAGCAGTGAAGGTGTCAAAGGCACCATCAACTTTACCCAAGAAGGAGATGGTCCAACTACTGTAACTGGAAGCCTCTGTGGTCTTAAGCCAGGCCTTCATGGCTTCCATGTTCATGCCCTTGGAGACACCACAAATGGCTGCATGTCAACTGGCCCGCATTTTAATCCTGTAGGCAAAGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATTTGGGAAATGTCACTGTTGGTGATGATGGCACCGCTACTGTCTCAATCATTGACAACCAGATTCCTCTCACTGGACCAAATTCCATCGTTGGAAGGGCTGTTGTTGTTCATGCAGATCCTGATGATCTTGGCAAGGGAGGACATGAACTTAGCAAAAGCACTGGTAATGCTGGTGGCAGAGTAGCATGTGGTGTTATTGGTTTGCAAGGCTGAACTACCGCACTCCACCATAGTTTGTTAATAAATGCAGTTGCATATGTATCAACCCGCAGCTACAGAGGTTTCTGATAGACTCTGAATAAAAGGATGAAAACCAACTGTTGTACTTTTTTGGTGGATTGGTTGTGTAATCTAAAAGTGTGTTTCGTTTGACCTCCAAAAAAAAAAAN | |||||||||
gi|33453707|gb|CF234278.1|CF234278 PtaJXO4F11F1111 Poplar cDNA library from young opposite xylem Populus tremula x Populus alba TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): GACTCTCCTTCACCCTCAAACTCAACAAACAAACACACTGTCTCTCTCCCTCTCTCTGNNTAAGGGGCGCTCTGAGATCACATAGAACAATGGTGAAGGCTGTAGCTGTTCTTAATAGCAGTGAAGGTGTGAGTGGCGCCATCTTCTTTACCCAAGAAGGAGATGGCCCAACTACTGTAACTGGAAACCTTTCTGGTCTTAAGCCAGGCNTTCATGGCTTCCACGTCCATGCCCTTGGAGACACCACAAATGGCTGCATGTCAACTGGGCCGCATTTTAATCCTGTAGGCAAGGAGCATGGTGCCCCTGANGATGANAATCGTCATGCTGGTGATCTGGGAAATGTCACTGTTGGTGATGATGGCACTGCTACTTTCACAATCATTGACAAACAGATTCCTCTTACTGGACCACATTCCATTATTGGAAGGGCTGTTGTTGTTCATGGAGATCCTGATGATCTTGGCAAGGGAGGACATGAACTCANCAAAACCACCGGTAATGCTGGCGGCANAATANCATGCNGTATTATTGGTCTGCAAGGTTGAACTGCTTCACTCTGCCNCA | |||||||||