| mature miRNA: TGTTCTCAGGTCGCCCCTG species: Populus tremula x Populus alba database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|163666108|gb|CU310423.1|CU310423 CU310423 LG0ADN Populus tremula x Populus alba cDNA clone LG0ADN16YA23ZM1, mRNA sequence TGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): GATCTCACATGTTACAGATAGATGTTGACACTGAGAAGGGTGGTCTTGCAATAAATCCAAACTATTTTGTGGACTTTGCAGCTGAACCTGATGGTCCTTCCCTAGCCCACGAGATGAGATATCCAGGTGGTGACTGCACATCAGATATATGGATCTAAGCATCCTAAATGGTTCGGCAGTGAGGGGTTACGTGAGAACAGACATTAGAAGTTGTAGTTATGTGACTGTAAACTGCAATGGCATGTTGTGGCAGGTTACTCTTGATGGATGTGCATCTATGTCTCTTCTAATGCTTTAATCCATCCTTTTAATAATAATAATAATTGCCGTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|33448099|gb|CF228670.1|CF228670 PtaXM0016A10A1002 Poplar cDNA library from mature xylem Populus tremula x Populus alba cDNA 5 TGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): CGGGGATGCCAGGGNCTTATAACTGATTTTCTCTTGTCTCTTGACGATCGGTTTCTATATTTTGTCAACTGGCTCCATGGAGATGTCAGACAGTACAACATTGAGGACCCCAAAAATCCTGTCCTGAAAGGGCAAGTCTGGGTTGGGGGGCTGATCCAGAAAGGAAGCCCAGTAGTTGCTGAGGGTGAAGATGGAAAAACCTGGCAGTATGATGTTCCAGAAATCCAGGGACATCGATTGAGAGGAGGGCCTCAAATGATTCAGCTGAGTCTAGACGGGAAGCGGCTTTATGTCACCAACTCACTTTTCAGCACTTGGGATCGTCAGTTTTATCCANAAGTCGTGGAGAAAGGATCTCATATGTTACAGATAGATGTTGACACTGAGAAAAGGTGGTCTTGCAATAAATCCAAACTATTTTGTAGACTTTGCATCTGAACCTGATGGACCTTCCCTAGCGCATGAGATGAGATACCCAGGAGGTGACTGCACATCAGATATATGGATCTAAGCATCCTTAATGGTTTGGCAGTGAGGGGTTACCTGAGAACAGAACTTAGGAAGTAATAAATATCAATGTGTAAATTGCAATGGCATGTTGTGACACCTACTCTTCGATGGATGAGTAACTTCNTTCCTTTTAATGCTNTAATCCATCGTTTAATATCAAATGATAATTTGCAGTTTCATAATCAACATGAACTTATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||