| mature miRNA: AACAGTATGTGTGGAATCTG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|60711349|gb|DN501159.1|DN501159 UM66TA04.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM66TA04 5', AACAGTATGTGTGGAATCTG EST sequence (targeted fragment marked with yellow): ACGGCCGGGGAGAGCATAGCTGCTCCCTGATGCGTCACAAAACATTCAAGTCAAGTTCGCAACAGATCAGTTTAGTATTGCTTACCTTCTTATCAGCTCTCCTCTACTTCCCCCGATTGCTTTCAGCAGAGAAATGGTGTTTATCAATCTCTGTACATTGTCTTTCTATCTATAGATTTATTCTTTCCTGTATTTGTCTATATATATGCTTACTGCTTACCAGCGCCATAGTCTCCAGGAGATGCAGTGACCTTGAAGTAAGCTTTGGTGTTATGGATGGTGACCAATGGGATACAACAGCGGAGGAAGTAGACAATCATTTGCCATCTTCTAGCTCAAGTCAAGGGGCCTATGAGTTGAATGATGTGGGAGAAGATGAATGGCAAATGGTGGCCAGAAAAGGAAACCAGTTTGTGATCAATGACCAACCTTTCTATGTCAATGGATTTAACACATACTGGTTGATGGTGTTTGCTGCTGATCAATCTACAAGAGGAAAAGTCACTGAGGTTTTCCAACAAGCATCCTCAGTTGGTCTAACAGTTTGTAGGACTTGGGCTTTTAATGATGGCCAATGGAGAGCTCTTCAGAAATCTCCTGGTGTTTATGATGAAGATGTTTTCAAGGCCTTGGATTTTGTGGTGAGTGAAGCAAAGAAGTACAAGATCAGGCTCATATTATCGTTGACTAACAACTGGGATGCATATGGTGGAAAAGCACAGTATGTTAAATGGGGAAAAGCTACTGGCCTT | |||||||||
gi|52385654|gb|CV231291.1|CV231291 WS0194.B21_B12 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0194_B12 3', mRNA sequence AACAGTATGTGTGGAATCTG EST sequence (targeted fragment marked with yellow): GCGGGTATCCATTGCTACCCATCGTTCAGAGCCAACCTCAAACATGACTACACCACTTCAAACCTCGCAATATAAAAATGGGAATGTAGTTGGCAGGCAGACATTTGTCAGGGACCCAAGAAAGCCAAGGAATTCAAAGCTGTTCTCTCCATTGCCAGAGTTCAGGACTGCATCAGAGACTACACCTACTGTTATGAGAACCAGTAGTAAATTCATGGGGAGTCCTCCAGCACAAGCAGGTTCTTGGAAGCCAAAGCACCCAACAGCTGTTGCACTGCAACGAAAATCTCTGGTGTGGAGCCCGCTAAAGCTAAGGAGCTTTCAAAACAGGAGACCATCTTTGTTGCCCTATCGACCATCATCAACTAATGAGGTGCAATAAAACTTTAGTCTTCATTTTCATGATAAATAGTAGGAGTATATACCTTTTTTTCTTGATTCCCATCTTCCCATTTTTCTTACATGGATATTAATCGCAATTGTATGCTACTTGCCTACTAAAATTCAATGTTCAGTGACATTAAATACACCAAAAAAAAAAAAAAAAAA | |||||||||