| mature miRNA: AACCGGTTTCGGTTCGGTTT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|24068151|gb|BU876627.1|BU876627 V023B03 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence AACCGGTTTCGGTTCGGTTT EST sequence (targeted fragment marked with yellow): GACAGACTATTTTCTTTAATTCGAGGGCCATGGATGGATGCCGGTAGCTGATATACTATTGGGATTTCACCTCTCCTCTGCTTGCTTACCGCAGTACAAACCCATGCACGAGGGGAAGCCTATCGAGCAACTAAAGTTGTTTCTCCACATTTTGGTGGATTCATGGCAGACCTTGCTTTAACTGTGCCTGATGCTCCTCTTGCATTGTCAGAACATGCTTTGGCCATTGGACAAGAGTTTCCTAATGTTGAAACTTGCAGAAGAACATTGAAAGATATTGCTATAGCGCTGCATTTCGATCTTCGGATAGTGAAATCAGATCGAAGCCGGTTTATAGCCAAGTGCTCTAAAGAAGGCTGCCCATGGCGTGTCCATGTTGCAAAATGTCCTGGAGTTCCAACCTTTTCAATTAGAACCTTACATGGAGAGCATACTTGTGAAGGAGTTCAAAACCTTCACCATCAGCAAGCATCA | |||||||||
gi|52500396|gb|CV247421.1|CV247421 WS01118.B21_B14 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01118_B14 3', mRNA sequence AACCGGTTTCGGTTCGGTTT EST sequence (targeted fragment marked with yellow): TCGGATAGTTTAATGGAATTAATCCCGCGCCCCCCCCGGTCATGGTTGAAGTCGACCCGAAATTGGTTGGTATTATTTGAAGAAATTGGAGGCGATGCGTCAAGAATTTCTCTTGTAAAACGATTGGAGACAAGTCATTGATTCAAAGCCATACCCTCGACAAAGAAAAACGCTTCTCCATGCTCTTATGAGTGCTTTCATGAGCCGTGACATACCACCCTAGCCTTCCTCCTAGTGTACCTAGCTAGTTGTTAGGTGAGGGCAAACCCCTTCGCTCAATAAGTTATAAATAAAACTTGCAGCCCCTCGTCTTTTTATAAAAAAAAAAAAAAAA | |||||||||