| mature miRNA: AAGGTCAATCTCATCTTCCA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73888911|gb|DT491649.1|DT491649 WS02548.C21_G03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02548_G03 3', mRNA sequence AAGGTCAATCTCATCTTCCA EST sequence (targeted fragment marked with yellow): AGTAGGATAACGAAATCGAAGAACGGCGATGGAAGGAGGAGGAGGGACACTATCGGAAATATACCAGAGTGCGAAGAAGTTGCTAATGAGAGCACAAGATGGGATCGAGAGACTGGAGCGACTGGAGAACTCGACTTCTAGTGGAGGATTAGATTCACCTGAGCTATCTTTCGTTGTCAAGAAGGATATCTCTCAGGTTCTTTCTCTTTGTGCCGATATGGATCGTCTCTGGCGCTCTGTTCAAGCCAAACCTCAACGCGATCTCTGGAGAAGAAAGGTGGAGCTAGTAGCTGAAGAGGCTGGGTCATTGAAAGAGAGTTTGGATAGGTATTTTGCAAGGAATCAAAGACGGATGAAGGAAGCTCAGGAGAGAGCAGAGTTGCTTGGAAGAGCTAATGGTGATTCAGCTCATGTTTTGAGAATATTCGATGAAGAAGCACAAGCAATGCAGTCAGTTCATAATTCAAAAAGAATGCTGGCAGATTCAATATCAACTGGAGCAGCCATTCTTTCCAAATATTCAGAACAAAGGGAACGCTTAAAGAGGGCACAACGCAAGGCATTGGATGTGCTTAATACAGTGGGGCTCTCCAATGCTGTACTGAGGCTGATCGAGAGGCGCAACCGTTTCGATAGATGGATCAAATATTTTGGAATGCTTATTACCCTTGTCATCTTGTATTTTCTCGTTAGGTCAAGTGGTTGAAGAGCGCTTGTTTTTTCATCTTCATAGATGGCTGTTCGGTTCGAAGCTAAGGAATTTGTACTTGAAAAAAGCATAATCTTATAGGATGGATTGGGAAGAAAGGCTATTAGGGTCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73886092|gb|DT488830.1|DT488830 WS02537.B21_I21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_I21 3', mRNA sequence AAGGTCAATCTCATCTTCCA EST sequence (targeted fragment marked with yellow): GCTGCCATGCACCTGCTTCCATAGACAACTGTTCCATTCGTTCCTCAAGTTCCATGTTCTTCTTAGTAATGCTCTCCACCTCTGCTTCTTTCTCATGAAGTTTTTGAAGAACCTTCTCTTCAACAAGGGAGATACTTTGAAGTTGGTCAGCTTGGAACTTCTCTAGGATAGTTTGCCGTAGTCGATCACCCTGAATTTTAAGGAATTTATCAACCTCTACATGCTGCTGCTGTAATTCACTATCAATATCATCACCAATAAGCGATAACAAAGCCGAGTCACCGGAAGATGAAACATGAGCATTGTCAAGAGACAACCCTAACCCAGTTGAAACTGATTGCGGTTGTAGGAAATCAACGGATGAAATCTGGGAATGATTCTCCAAAAAATCTTGCTCCTTCAAGCTCTTTCTCTTGGGTTCCAGTCTATAATTCCATTGCAATTCAAATCCCCCATCACTACCATCATTGACAGGAACCGGAGCAAACCCCACCACATGAACTAGAACAACAACCACCACCACAAAATACCCAAAATTTTATAGCTTGATTTAAGATCATGCTAGCTAATTACATAAAAAAAAATTGTTACCAAATTGTAAGTAATTGAGCTTGATTTAACCTAAAAATGGTAAAATTAGGCTGGTATTATTTAAATATGTATAAAAATAAATTAAAGAATCCTTCGTTTATTTCTCTATGGCTTCTTAGCTTGAAAAATAAATAGAGCAGTAAAAAGAGAGAAGTTAAGAAACTTACAAGGTGGAACATAGGGAGGATGCTGAGATTGATCTTGCAGATTAGAAGGATTCAAATACGCTACTGCAGGAGAAATCTGGCCTTCGATTGCGTATACATTTCTCAAATTCTTAGGCTGCTGCTGCTGCTGCTGCTGAGGTTGGTAGTGTTGTTGAAACTGGTGCTGGGGGGGGGGGCCCGGTAC | |||||||||