| mature miRNA: AATTCTTACAGTGGCCATTGA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73880087|gb|DT482825.1|DT482825 WS02520.B21_O04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02520_O04 3', mRNA sequence AATTCTTACAGTGGCCATTGA EST sequence (targeted fragment marked with yellow): CCGTAGGGGTCATCGTTATCGATCCGGCGATTATTCCTGAAGGCTGCACAGCCAACCACATAGGCAATCACTAGAATGATTAATATGACGATGTTAATGACCGAGACCTTCCTCCAACTCTTCCTCAGGTTGGCTAGCAAACCAGCTTTGCAAGAATTGCAGGAATAGCACAGTCGCTCTTGATCGTTGTTCCAGGTGTTACAGTCAGTGCTGTAAACAACCCCTCCAGATGATGACCAGAAAGTCTCGTTCATATAAGTGAAGCCGCATTCTGTAGGGGGCTTGCAACAACCAGACTCAATAGAGCTGAGCTTCCTGCTATAGAACGTATCTGCAGTCTCAGGGACGCCAGAAGTAGTTCTCCCCATCTTGCCACAAACCTTAGAATCTCGTATACAAGAGCCAATCTTGTGCCAGTAGCTATCACTAGCTACTCGATCCTTCAACCACCCTGAATAGTCATGCAGATAATAGTCAGAATACGCACGATTCGGGAGTGGGCGGCCCGACCCTTTATCGGTGACAACATAGGCAAAGATGATGAACCCTAAAAGCGCGGCGATGATGAAGAACATAACAAATAGGTAAGCCCACATCAAGAAAGTGTTTCGATAACACGCGCCAGCGAAACCGGCTAAAGAAACGACCATGATTGAGATCCCAATTATTATCAATGGCCACTGTAAGAATTTGAGACAATCTGTGTTGTTGGCTCTGCTGCTTAGCCATATACCACCTCCTAGGATGGGTATTGATAGCAAAAAGGTCAGGAAGTTGAGTACCCCTATCAAGTGATTGCTAGATCTCATGGTTGATCTTTCTCTGTTTCTCTCTCCCTTTCTGCAACAAGCGCGTCGGATCTCTCTCTCTGCTCCGTCTCTCTCTCTATGTCTTTCTTTCTTTACTGTTAATTTTTG | |||||||||
gi|52373713|gb|CV225405.1|CV225405 WS0161.B21_E18 PT-DX-A-7 Populus trichocarpa cDNA clone WS0161_E18 3', mRNA sequence AATTCTTACAGTGGCCATTGA EST sequence (targeted fragment marked with yellow): CTTTTTGTCAAATTTGCTTCTGGTATTGTGTTAGATTCTTGGAGTGAAGCTAATAGATCTCATCTTGTTGCAAAGCTGATTTTCTTGGACCAACTTTGTGAGATCTCGCCTTACCTTCCAAGAAGCTCCCTCGAAGCCTATGTTCCTTACGCAATTCTCCGCTCAGTTTATAGCCAGTACTACATGAAATCTCCATCCATGCCTCTGGCACTACTAAGTGTCTCACCCCACCATTCACCTGCCATATCACTATCTCACGCCTCTCCTGCAACCAAGCATCCTCGTGGGGACTCAACTCCACAGCATAGCAGCAATGACTCAGGTTTTTTTAAGGGATCATCATCCCATAGCCAGGAACACCTTTATGATATGGATAGTGGAAACCTGCGCGGCATGGACAGTAAACATCGAAATGTTCGCCGCTCCGGGCCTTTGGATTATAGTTCAAGCAGAAAAGTTAAATTTGTTGAAGGCTCAACTTCAGGGAGCACAGGTCCGAGTCCACTACCGCGGTTTGCCGTGTCAAGATCTGGGCCGTTAATGTACAAGTAGAAAACGGTTAACAATTGCAGGGGCGTGAGGGTTGATAAATTATGAGCATCTCATCAATCATCAGTTATATATAATTGTTAATCTAGCAGACAAGGTTGGCATTATGTAAATGTCATAAATTCTTTGTTTCTATCTTGTTCTTAGCCGTACTGCCCCTAATCATATAAATTAATGTCCGCTGTGAGAGTTCAACGTGGTTAGTTTGATTTCTCAGTCTGTTGATCAGCATTTCAAGATATTTGAGCTCCATTTCTCTTGGAAAAAAAAGTTATCTAAATCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73879798|gb|DT482536.1|DT482536 WS02520.B21_B09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02520_B09 3', mRNA sequence AATTCTTACAGTGGCCATTGA EST sequence (targeted fragment marked with yellow): CAAATTTGCTTCTGGTATTGTGTTGGATTCTTGGAGTGAAGCTAATAGATCTCATCTTGTTGCAAAGCTGATTTTCTTGGACCAACTTTGTGAGATCTCGCCTTACCTTCCAAGAAGCTCCCTCGAAGCCTATGTTCCTTACGCAATTCTCCGCTCAGTTTATAGCCAGTACTACATGAAATCTCCATCCATGCCTCTGGCACTACTAAGTGTCTCACCCCACCATTCACCTGCCATATCACTATCTCACGCCTCTCCTGCAGCAAAGCATCCTCGTGGGGACTCAACTCCACAGCATAGCGGCAATGACTCAGGTTTTTTTAAGGGATCATCATCCCATAGCCAGGAACACCTTTATGATATGGATAGTGGAAGCCTGCGCAGCATGGACAGTAAACATCGAAATGTTCGCCGCTCCGGGCCTTTGGATTATAGTTCAAGCAGAAAAGTTAAATTTGTTGAAGGCTCAACTTCAGGGAGCACAGGTCCGAGTCCACTACCGCGGTTTGCCGTGTCAAGATCTGGGCCGTTAATGTACAAGTAGAAAACGGTTAACAATTGCAGGGTCGTGAGGGTTGATAAATTATGAGCATCTCATCAATCATCAGTTATATATAATTGTTAATCTAGCAGACAAGGTTGGCATTATGTAAATGTCATAAATTCTTTGTTTTTATCTTGTTCTTAGCCGTACTGCCCCTAATCATATAAATTAATGTCCGCTGTGAGAGTTCAACGTGGTTAATTTAATTCCTCAGTCTGTTGATCAGCATTTCAAGATATTTGAGCTCCATTTCTCTTGGAAAAAAAGAAAGCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|24067944|gb|BU876420.1|BU876420 V020E02 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence AATTCTTACAGTGGCCATTGA EST sequence (targeted fragment marked with yellow): AGGTTAAGCAGTACTGTGAGATGGAGAGTCATGAAGAGAAATTGCACAAGCTGGTATTGCAGAATAAGATTGATGAGACCAAGCGTAGAATGAAGGAAGAAGCTAGTAAGATTGACCAAATGAAGATTGAAAAGAATAGAGGTAATAAAGGAGGTTTTATGTCTTCAATGGGCTCTGGAAGAATTGAGAGCAGCTTTAATGATATGAGCATTTCCAGTGGCGGAGGAGGTGGTTTTGGAAGTGGATCTGGGTTTGGATTGACCAGTGATGTTGACTCATTTTCCAGCAAGCCTAAAGGTCGTCAACCTTCATCTGCCACTGCTCCTCCCAAAGGCCTTGGCATGAAGCTCGGCAAAACCCAAAGGACAAACCAGTTTTTGGAATCCTTGAAAGCAGAAGGTGAAATGATCGTTGAAGATGTGCAGCCATCAAAGTCAACCCAGTATACATCAGCTGCTCAAAAACTAACTGATCCTGTCACTTTGACTGCTGAGGAGAAACTCAATGTCACTCTAAAACGGGATGGTGGAATGGGTCACTTTGATGTTCAAGGGCATTTATCACTTCAAATTCTTAACCAAGAAGACGGGCTCATCCAAGTTCAGATTGAAACTGGGGGGAATCCAGGTGTCATTTTCAAGACACATCCTAACGTGAACAAAGAATTATTTGCTAATGAAAACATTTTGGGCTTGAGGGA | |||||||||
gi|38585277|gb|CK100952.1|CK100952 F012P17.5pR Populus flower cDNA library Populus trichocarpa cDNA clone F012P17 5', mRNA seque AATTCTTACAGTGGCCATTGA EST sequence (targeted fragment marked with yellow): ACATAAAAATCCCACATTTCACTGGCTACTGGAAGAATCACACACTCTCTCTCTTTTTAAAGAAAGAAACATTCTTTACTGTAGGACCTAGAGAGGCGTTAATCAAGGACAAGACAGGCGTTGATTGTGCCGGGAGGGGGTCCACGTCAACATTCCGACAATGGCTAAGTCTTGACTTATCTTTCTTCACTTCTTCTCTCTGGTTATCTTCATTCTCCGTCCTCCGGTGGTAGGCCGTCTGCAGTTAACAGCAAGCCCATCTAATTGGTGGGTCACACGACGGTTGTTGAGGTGGCCGGAGCTTGACTTCTCGATCGTGGATAGATAGTAGGTTTGGAGCTTGGTCACTGCTTTTGAGTCGGTTGCTCTTATCTCCATAGCTGGCTTTATACC | |||||||||
gi|52400813|gb|CV238793.1|CV238793 WS0128.B21.1_B11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS0128_B11 3', mRNA sequence AATTCTTACAGTGGCCATTGA EST sequence (targeted fragment marked with yellow): CGGTCCATACAATCTCAACCTCTTCAGAATGATTTGGAGGACACTCTTTGTGGTTACAACCACTGTGATTTCAATGCTCCTTCCCTTCTTTAACGACATAGTTGGCCTCCTTGGGGCTTTGGGATTTTGGCCATTGACCGTTTACTTCCCTGTTGAGATGTATATTTCACAGAAGAAGATACCAAAATGGAGCACAAGATGGCTTTGCCTCCAAATCCTAAGTGTTGCTTGCCTGATTATTACCATAGCTGCTGCTGCTGGTTCTATTGCTGGAGTTCTTGATGATGTCAAGACTATCAAGCCCTTCCAGACCAGTTATTAGATTATCTGAATTTCATCATTATCACCATTAATGAACACATATCACAAGAAAGACAAGCAACCAACCGAGTCATCTAGGATTTTAGTCCCTTTTCATGTTCATATAATTCCCGAGGTGATCATGTTAATTGATCGTCTTATTTCAATGTAATTTTCTTGTTTATCTGAACAGTATAAAAAAAGGGGGGGCCCATGCATGTAATGTAAGTGTACTGTAAACATGTGTCCCTGATTATCTATCCTCCCAGCACTGTAACTTTTCAATGCCAACTGAAAGAATTTCTGCGAAGGGTTCCCCCTCTCACTTACTAGTTAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGG | |||||||||
gi|60711727|gb|DN501537.1|DN501537 V001A09.5pR Populus male catkins cDNA library Populus trichocarpa cDNA clone V001A09 5', mRNA AATTCTTACAGTGGCCATTGA EST sequence (targeted fragment marked with yellow): GATCTTAATTAATATTAATTTAATTAATAATCTTAAAACTATAATTTTGTAGATCCTTTTCTTCATTATCTCTCTGCCTTGTTCAACAAAGTTCCTGTCAACAATGGCTGCTCATGTGGAAGAACGCGAGATTCAAAAGAAGTATTGGATGGATAACATTTCTGATTTGAGTGTGAATGCGATGATGCTTGACTCCAAAGCATCTGAACTTGACAAGGAAGAAAGACCTGAGATACTTTCTCTGCTTCCACCCTATGAAGGAAAAACAGTTTTGGAACTTGGAGCTGGTATTGGCCGCTTCACTGGGGAATTGGCACAGAAGGCCAGCCAAGTTGTGGCTCTGGACTTCATTGAGAGTGCCATAAAAAAGAATGAAAATATTAATGGACACTATAAGAATGTCAAGTTTATGTGCGCTGATGTGAAATCCCCAGATCTGAATTTTTCAGAGGGATCGGTGGATTTGATATTCTCAAATTGGCTTCTCATGTATCTTTCCGACAAGGAGGTGAACAGACTTGATCCTTATTCCTGCTTGTCTTGCTTAATTGTTGTTTTGCTTACAGATTTGTTAGTAATTCATCTTAAGGCTTCTTGGAATCAGTGGTCAGTGCTCTGATGATCTTATTGGAGTCTGCCACATACATTCCCTCATTTGATCTTAGTGAAATGCTCGTAAATATCATGTA | |||||||||