| mature miRNA: ACCAATAGGAACACCGATGG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73874552|gb|DT477290.1|DT477290 WS02519.BR_I11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_I11 5', mRNA sequence ACCAATAGGAACACCGATGG EST sequence (targeted fragment marked with yellow): GGGAGATTCCATGTATTTCTGCTGTTGTGATTGCTCTACTTTCTGAGCCAAAGCCAAAGATTGAATACATTCTCAAGGCTGTTGGTGGAAGCTTAACAGCACTTCCTGGAGTCTCAGATATGATTGATGATACTGTGAATTCGATTGTTACGGATATGCTTCAGTGGCCCCACAGGATTGTTGTTCCTATTGGTGGTATCCCTGTTGACATAAGTGAATTAGAGCTTAGACCTCAAGGAAAGCTTACAGTGACCGTAGTGAAGGCAAATGACTTGAAGAACATGGAAATGATTGGAAAATCTGATCCTTATGCAGTTGTATATGTCCGGCCAATGTTCAAGGTTAAAACTCAAGTCATTGATAATAACCTGAATCCTGTTTGGAATCAAACATTTGATTTGATTGCTGAAGACAAGGAGACGCAATCACTTATTCTTGAGGTCTTTGATAAGGACATTGGGCAAGACAAGAGATTAGGAAGAGCAAAATTAGCTTTAAATGAGCTGGAAGCCGAAACTTGGAAGGAGCTGGAGTTTGGACTGTTGTCATCGTTTGATACATTGAAGGTTAAGGATAAGAAGGATAGAGGAACTATTACAATTAAGGTTTTTTACCATGAATTTAACAAGGAAGAGTCGTTGGCTGCTCTAGAAGAAGAGAAGCAGATCATAGAGCAACGAAAGAAACTAAAAGAAGCTGGAGTTATTGGGAGCACAATGGATGCGCTTGATGGGGCAGCATCACT | |||||||||
gi|24063393|gb|BU871869.1|BU871869 Q035E04 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence ACCAATAGGAACACCGATGG EST sequence (targeted fragment marked with yellow): GGATAGCTTTACCATGTAGATCCCCAAAACCCTAATCCCCAAAACCTTCCTTCTTCTTCTGCTTCTTCTTCGTCTAATAAAAACCCCACCGAAATTAAACCCGGCAACGGCAATTACTCGGGTCAAAAGGTCCATTTCTCGAACCCACCCGAGACAACAAATCCGGACCCTGCAACACTGAGGGAACAATGGAGGTTTGCTATTAGGCAGTACAGTAAATGGTATTCTCACGCTTGGGGCACTGCTATTCTGGCTGGTGTTTCGTTTTTCGCGCTTGGCTGGATCATCAAGGGATCCAATCCTTTACCGTCTTACAGGACTGATGATTCCTCTTCTTCGCCTTCTAATGATGCTAAAGAAAAAAGCAACCCGATAATTGATGCACAAGAATAATGGAGATCAGCCTCTGTATTGGCAGGTTTTTACAATCGAGGTTCTTATTGGTTTTTATGTACAGTTCTTATAAGTTTTGTGACTTAAGAATATGTTTGGCAGTGTGGTAGCGGTTGCTTTTCAAATAACTTTTCGTGCTGAAATGCATGCCAATGATG | |||||||||
gi|73898151|gb|DT500889.1|DT500889 PX0019.BR_L01 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0019_L01 5', mRNA sequence ACCAATAGGAACACCGATGG EST sequence (targeted fragment marked with yellow): AAGTGTAGTGCTCTGAGATAGTATATATACAACGTGCAGACATAAGTGGACAGATCGACTGCTGCTGCTGCTGATTTTTTTGTGATGGAGATGGCGAAGAGGCAGCTGGTGGTGTTGCTATTGGTGGTGGTTGCTTTGTTTGAGGGCTCACGGGCAGTGAGCGTGTGTGACATTAGTGAGGATGGTCTCGCAGCCTGCAAGCCATCTGTGACCAAACCAGACCCAGTTGAGCCGCCATCAGTTGATTGTTGCAAGGCTGTTTCTGGGGCTAACTTCACATGCCTTTGCTCTTACAAGAATTCATACCTGTTGCCTTATCTCGGCATCGATCCTGATCTTGCCATGGCTTTGCCTTCCAAGTGCAACCTCAGCACTGCTGTGCCTAGCTGCTAAGGCATGAAAAACCATTTCAAACAGAAGAGGGGACGGTGAAGCTATGGATAAAGCTTAGCTGGCTTTGAAAACACTGTTCGTTTGTTTATTTTCAAGGAGGAGATATGTTCTCTTTCCGTTGTAACTGTGTGGTGGATGTCATTTGTAGTGTGATAAGCCTCGTATGAAAAGGACATTTTCA | |||||||||
gi|73885686|gb|DT488424.1|DT488424 WS02536.B21_G09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_G09 3', mRNA sequence ACCAATAGGAACACCGATGG EST sequence (targeted fragment marked with yellow): CTTCAATGGTTAGTTCCTGTAATGTCCCCCTCAGAAGGATTTGTATATAAGCCTTACACTGCCCCTGGATTCATGGGATCGGGTTGTGGAGGATGTGGACCTTTTGGGCCAATTCCCTTGACAGACAACTTTATGACTTCAGCTTATGCGATTCCAACATCTCATTATCATCAAGGTATTGGGGTCTCACCAGGTGCTCCTCCAGTTGGTAATGCTTGCTTCGCCCCATATGGCATGCCAGGAATGAACCCAGCCATCTCAGGTTCTGCAGGGTCTGGTTCCTGTGGTCAAACTGCTCAGTTTCCAGGAGGCATTTTGAGCTCGAACATGCCACATCAAAGCTCATGTAATGAACGGACTCAAAAGAGTGAAGCTGTTTTAGAAGGTATGAAGCTTCGGGCATCTAAAAACACTTCGGTACAAGGAAGTACAGGTAGTAGTCCCAGTGGCAGAGTGCAAGGGGTTGGGACTGTTCAAGCCGCTGATGGAAGAGCTGCGTTCCCACCTTTCCCAGTGACTCCTCCTTGCCCTGAGGGAGCCCCTCAGCATCAAGAGACAGACCAGCTGTCGAAAGTGATCAAGGTTGTGCCTCACAATGGTAGATCTGCTACTGAATCAGTAGCTCGAATTTTCCAATCCATACAGGAAGGGAGAAAACAATACGACTCTCTTTAGCTTTTTTTTATAGTGTCTGACAATTGTTGGTAAACAACATGAGACACATCTGAGTTGCTAATGGTTCTTGGTTATTTGCTCCTCGGTTTTTTTATTGGTATAATGTGTAATGTACTCTCCTCTTTTCAGACCTGATTGTAGGCTATTTGTATGTAGATAGTCTGTAAGAAAACAGCGATGTAACATGAATGTCGTGGTCTTCATGCTGTTGTATTAAAAAAAAAAAAAAAAAA | |||||||||
gi|52499522|gb|CV246547.1|CV246547 WS01111.B21_A16 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01111_A16 3', mRNA sequence ACCAATAGGAACACCGATGG EST sequence (targeted fragment marked with yellow): GAGGCAGCTGGTGGTGTTGCTATTGGTGGTGGTTGCTTTGTTTGAGGGCTCACGGGCAGTGAGCGTGTGTGACATTAGTGAGGATGGTCTCGCAGCCTGCAAGCCATCTGTGACCAAACCAGACCCAGTTGAGCCGCCATCAGTTGATTGTTGCAAGGCTGTTTCTGGGGCTAACTTCACATGCCTTTGCTCTTACAAGAATTCATACCTGTTGCCTTATCTCGGCATCGATCCTGATCTTGCCATGGCTTTGCCTTCCAAGTGCAACCTCAGCACTGCTGTGCCTAGCTGCTAAGGCATGAAAAACCATTTCAAACAGAAGAGGGGACGGTGAAGCTATGGATAAAGCTTAGCTGGCTTTGAAAACACTGTTCGTTTGTTTATTTTCAAGGAGGAGATATGTTCTCTTTCCGTTGTAACTGTGTGGTGGGTGTCATTTGTAGTGTGATAAGCCTCGTATGAAAAGGACATTTTCATTTTGGTTCCTGTCTATTATTATTATTATTATTATTATTATTGATAACCCGGGATGTCTGGACCAACTTACACGTCTGACTATCATTAAACCGGCTTGTCTTCACAGTTCAATTCGAGATTTAATTAATCTAAAAAAAAAAAAAAAA | |||||||||
gi|52401428|gb|CV239099.1|CV239099 WS0231.B21_F05 PT-MB-A-13 Populus trichocarpa cDNA clone WS0231_F05 3', mRNA sequence ACCAATAGGAACACCGATGG EST sequence (targeted fragment marked with yellow): GCTGAGATAGTATATATACAACGTGCAGACATAAGTGGACAGATCGACTGCTGCTGCTGCTGATTTTTTTGTGATGGAGATGGCGAAGAGGCAACTGGTGGTGTTGCTATTGGTGGTGGTTGCTTTGTTTGAGGGCTCACGGGCAGTGAGCGTGTGTGACATTAGTGAGGATGGTTTCGCAGCCTGCAAGCCATTTGTGACCAAACCAGACCCAGTTGAGCCGCCATCAGTTGATTGTTGCAAGGCTGTTTTTGGGGCTAACTTCACATGCCTTTGCTTTTACAAGAATTCATACCTGTTGCCTTATTTCGGCATCGATCCTGATCTTGCCATGGCTTTGCCTTCCAAGTGCAACCTCAGCACTGCTGTGCCTAGCTGCTAAGGCATGAAAAACCCTTTCAAACAGAAGAGCGGACGGTGAAGCTATGGATAAAGCTTAGCTGGCTTTGAAAACCCTGTTCGTTTTATTTTCATGGAGGAGATATGTTTTCTTTCCGTTGTAACTGTGTGGTGGGTGTCATTTATAGTGTGATAAGCCTCGTATGAAAAGGACATTTTCATTTTGGTTCCCGCCTATTATTATTATTATTATTATTATTATTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAA | |||||||||