| mature miRNA: AGAGATAGTCTGCAATGTGT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73869457|gb|DT472195.1|DT472195 WS01225.BR.1_L12 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01225_L12 5', mRNA sequence AGAGATAGTCTGCAATGTGT EST sequence (targeted fragment marked with yellow): TTCGACCAAAAGAAGAATGCCATGGGCACAAATGTGCTCAAGACAGAAACACCAACCAGCATTGATGATGCTGTGTACTTTTTAAAAGAAAATTTCAATGAAGGTGATCACAGGCCTGCAATTTCTTTTGGTTTTGGCGATCCCTCTTGTTTCGAGTGCTTCAGGACCACTCCTATAGCTGAAGATGCCATAGTTGAAGCTGTTCGTTCTGCTAAATTCAATTCTTATGCTCCTACTGGTGGTATTCTTCCTGCAAGGAGGGCTGTTGCAGACTATCTCTCTCGCGATCTTCCTTACCGGTTATCACCAGATGATGTCTATCTCACCCTTGGTTGCAACCAAGCTGCAGAAATCACAATTAAAGTCCTAGCTCGGCCCGGAGCCAATATTCTGCTTCCAAGACCTGGTTATCCAGATGTTGAAACTTATGCAATTTTTAACAACCTAGAAATTAGGCAGTTTGATCTTCTCCCGGAGAGAGGTTGGGAGGTTGATCTAGATGCTGTTGAAGCTATCTCAGATGAGAACACCATTGCTATGGTTATAATCAATCCTGGAAATCCTTCGGGAAGTGTTTATACATACAATCATTTGAATAAGATTGCGGAGACTGCAAGAAAGCTTGGGATTCTTGTGATTGCTGATGAAGTTTATGGCCATCTTGTTTATGGGAGTAGTCCATTTGTGCCCATGAGTTTGTTTGCCACAATTGTACCTGTTATTACTCTTGGATCTGTATCAAAAAGATGGATGATTCCCGGTTGGGGGCTTGGTTGGTTAGTGACTTGTGATCCAAGTGGGTTGCTTCGAAAGGATGAGATTGCCGAGTCCATTAACAACTTCTTGTCTACTCGCCTTTCCCACCAACCTTTATTCAGGGTTCTATTCCTCAAATCCTAAA | |||||||||
gi|73896531|gb|DT499269.1|DT499269 WS0117.BR_M22 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0117_M22 5', mRNA sequence AGAGATAGTCTGCAATGTGT EST sequence (targeted fragment marked with yellow): TTTAAGCTATTTCTGCTCCTCCATTGTGGATCTGCTTATACTTTTCAGACCATCTCTACTCTTCATTGAATTTAATTAACAAAAATGGCTGGAGGAGGGGTGATCCACCAGCTTCTGAGGAGAAAACTCCAGTCACACTCTGGGGTCCCTCCAGTCTTATCTTCCTTTACTTCAAAGAAATTTCATGATGATGCTGGATCTTTGGGTATGAAATCCCTAAGAGCATTTGCATTACTCGGAGCCGGACTTTCAGGGTTTCTGAGTTTTGCATCAGTAGCATCTGCTGATGAGGCTGAACATGGGTTAGAGTGTCCAAGCTATCCTTGGCCTCACAATGGGATTCTAAGCTCATATGACCATGCTTCGATTCGTCGTGGTCACCAGGTTTACCAGCAAGTATGTGCATCTTGCCACTCCATGTCCTTGATTTCATACCGTGATTTGGTGGGTGTTGCATATACAGAAGAGGAGACCAAGGCTATGGCGGCAGAAATTGAGGTGGTTGATGGACCTAATGATGAGGGTGAGATGTTTACACGTCCGGGTAAACTTAGTGACCGTTTTCCTCAGCCATATTCAAATGAACAAGCAGCTAGATTTGCTAATGGAGGAGCATATC | |||||||||
gi|73879645|gb|DT482383.1|DT482383 WS02519.B21_K20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_K20 3', mRNA sequence AGAGATAGTCTGCAATGTGT EST sequence (targeted fragment marked with yellow): GTTAAAACTCTAATTCAGCAATTTTCTGTACATGGAACAAGGAAAAAAGAACTCTGAATAAACTCCCTACATACAGTTTCACTGGGTAATTCTTCAATCTTCATGCACAAATATGGATGATGGAACCAAAGTTTGCTCTTTCTCCAGGAAATTGTATACTCTGCTATGGTATCATAAAAGACAGCATTCCACATGACTTCCATGCAATAATCAGAAAGACATCTACAAATAACAGCGTAAGACCCCCAGAAATCATCAGCATTTCCAACAGATTTTGTACTTCTGGGTAATTGCACGGACAACTCATCAGCCCATGTCTGATCAGAGATATAATTGCAAGCAGCAGCATCACACTCAGGAGTAGAAAAAATCATCCTCTCACTGGCAGATTGAGACATTTTACCGTCCACAGAACAAGTTTTGGCAGCCTGATTATCAAGCATAAGATATCTCTCTGCTCTCTTTGTGCGAACAAACTCTGAAATGACATTGCAGATTATCTCATCTAATGCAAATCTACGAGCAGCTTTCAATATTCCGGAGTGCAATTGACTGGAAACTTCTTCAGAAATTACAGATATGAAACTTTGAGATGAGCCAGTTTCAGTGGTGGCATCGGTCATGGAGAAAGATTCAGGTTTATCCAATCTCCAAGCATTCATAATAGATAGCAGAGGAAGGGGTCTAAACTTATTCTGAGCATGATATATCATTAATGAATCTTTAAGATACCCGTACTGATACCAAGAATAAAGCTCCAGAAGAGAATGTGGCCCATGCTTCCTCCCATCATCGTCCTTGAATAGCCAACAGGA | |||||||||
gi|73877391|gb|DT480129.1|DT480129 WS02528.BR_A05 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_A05 5', mRNA sequence AGAGATAGTCTGCAATGTGT EST sequence (targeted fragment marked with yellow): GTTCTGCTCCTCCATTGTGGATCTGCTTATACTTTTCAGACCATCTCTACTCTTCATTGAATTTAATTAACAAAAATGGCTGGAGGAGGGGTGATCCACCAGCTTCTGAGGAGAAAACTCCAGTCACACTCTGGGGTCCCTCCAGTCTTATCTTCCTTTACTTCAAAGAAATTTCATGATGATGCTGGATCTGTGGGTATGAAATCCCTAAGAGCATTTGCATTACTCGGAGCCGGACTTTCAGGGTTTCTGAGTTTTGCATCAGTAGCATCTGCTGATGAGGCTGAACATGGGTTAGAGTGTCCAAGCTATCCTTGGCCTCACAATGGGATTCTAAGCTCATATGACCATGCTTCGATTCGTCGTGGTCACCAGGTTTACCAGCAAGTATGTGCATCTTGCCACTCCATGTCCTTGATTTCATACCGTGATTTGGTGGGTGTTGCATATACAGAAGAGGAGACCAAGGCTATGGCGGCAGAAATTGAGGTGGTTGATGGACCTAATGATGAGGGTGAGATGTTTACACGTCCGGGTAAACTTAGTGACCGTTTTCCTCAGCCATATTCAAATGAACAAGCAGCTAGATTTGCTAATGGAGGAGCATATCCTCCAGATTTAAGTCTTATTACAAAAGCTCGTCACAATGGTCAAAACTATGTGTTTTCTCTCTTAACTGGTTATCGTGATCCTCCTGCTGGTGTTTCGATCCGAGAGGGTCTGCACTACAATCCTTACTTTCCCGGGGGAGCTATTGCCATGCCTAAAATGCTCATTGACGGTGCTGTTGAGTATGA | |||||||||
gi|24074743|gb|BU883219.1|BU883219 UM87TG04 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence AGAGATAGTCTGCAATGTGT EST sequence (targeted fragment marked with yellow): GATTGTGGATCTGCTTATACTTTTCAGACCATCTCTACTCTTCATTGAATTTAATTAACAAAAATGGCTGGAGGAGGGGTGATCCACCAGCTTCTGAGGAGAAAACTCCAGTCACACTCTGGGGTCCCTCCAGTCTTATCTTCCTTTACTTCAAAGAAATTTCATGATGATGCTGGATCTGTGGGTATGAAATCCCTAAGAGCATTTGCATTACTCGGAGCCGGACTTTCAGGGTTTCTGAGTTTTGCATCAGTAGCATCTGCTGATGAGGCTGAACATGGGTTAGAGTGTCCAAGCTATCCTTGGCCTCACAATGGGATTCTAAGCTCATATGACCATGCTTCGATTCGTCGTGGTCACCAGGTTTACCAGCAAGTATGTGCATCTTGCCACTCCATGTCCTTGATTTCATACCGTGATTTGGTGGGTGTTGCATATACAGAAGAGGAGACCAAGGCTATGGCGGCAGAAATTGAGGTGGTTGATGGACCTAATGATGAGGGTGAGATGTTTACACGTCCGGGTAAACTTAGTGACCGTTTTCCTCAGCCATATCCCAATGAACAAGCACCTAGATTTGCTAATGGAGGAGCATATCCT | |||||||||
gi|52496299|gb|CV243324.1|CV243324 WS02518.B21_I18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02518_I18 3', mRNA sequence AGAGATAGTCTGCAATGTGT EST sequence (targeted fragment marked with yellow): GTTGTTGAGTCAGGTAGCACTGTGGGTAAAGAGAAGGCTACAATTTCTCTCCAGAGATTGTCAATGTCAGCAGAAACAGCCAGGGCAATTGTTGGTCATGGTGGGATTCGACCACTGATTGAGATCTGTCGAACTGGTGATTCTGTATCACAGGCTGCTGCTGCTTGCACATTGAAGAATATCTCAGCTGTCCCTGAGGTTCGGCAAAATCTAGCAGAAGAGGGAATCGTGAAGGTAATGATCAATCTCCTAGACTGCGGGATTTTACTGGGATCAAAAGAATATGCAGCAGAATGCTTGCAGAATCTCACTGCCAGCAATGACAATCTGAAAAGAGCTGTTATTTCAGAAGGCGGAATTCGAAGCCTATTGGTATATCTTGATGGTCCACTACCCCAAGAATCTGCAGTTGGGGCATTAAGGAATTTGGTTAGCTCAGTTTCTACAGAAATGCTGATATCTTATGGTTTCCTCCCCCGTTTGGTTCACGTGCTCAAGTCTGGATCACTGGGTGCCCAGCAAGCTGCTGCATCTGCAATTTGCAGGGTTTGCACATCAGCAGAGATGAAAAAATTAGTGGGGGAAGCTGGGTGCATCCCTCTTCTTATCAAATTA | |||||||||
gi|18004996|gb|BI121021.1|BI121021 F026P94Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence AGAGATAGTCTGCAATGTGT EST sequence (targeted fragment marked with yellow): GTCAGTTGTGGTTTAAGCTATTTCTGCTACCTCCATTGTGGATCTAGCTTATACTTTTCAGACCATCTCTACTCTTCATTGAATTTAATTAACAAAAATGGCTGGAGGAGGGGTGATCCACCAGCTTCTGAGGAGAAAACTCCAGTCACACTACTGGGGTCCCTCCAGTACTATATCTTCCTATTATTTCAAAGAAATTTCATGATAGATGCTGGATCTGTGGGTATGAAATCCCTAAGAGCATTTGCATTACTCGGCGCCGGACTTTCAGGGTTTCTAGAGTTNTTGCATCAGTAGCATCTGCTGACTGAGGCTGAACATGGGTATAGAGTGTCCAAGCTATCCTTGGCCTCACAATGGGATTCTAAGCTCATATGACCATGCTTCGATTCGTCGTGGTCACCAGGTTTAC | |||||||||