miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: AGATTGAGCCGCGCCAATATC
species: Populus trichocarpa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|73897013|gb|DT499751.1|DT499751 WS9991.BR_E01 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0119_C10 5', mRNA sequence 

AGATTGAGCCGCGCCAATATC
|||| |||||||.| ||||||
TCTATCTCGGCGTG-TTATAG

EST sequence (targeted fragment marked with yellow):
AGAGGGACAAGACCTGTAAGAGAAGACTTGGCTGCTAAGTCGAGGAAGACAGAACAGAGGAAAGGATATTGTGCGGCTCTATCTTTCTACTTCTATGAAAGGCAAGTGTTCAGGGACTCTGGGCTAAGATAAGAGACCCAGGGATCAAAGACGAGATCTATCCTAAAGAGAAAGAAGAAGAAAAGAGGACTCTCGAAGCCAAGTAGTAAGATCCCGGCCGAACTAGTAGAAGAAAGAATGCCTCAACAATCGATTGAAAGACGTCAGGCGCCTTTCATAGCAATCCATAGAACGAGCTATGGAAAGAAAGAATTCAATTCCCATCCCTTCACTTCAAAGCGGGAGCCATACTCCCGACCTCTCTCCACTACCAAAGAGAAGAGAAGACAAAGAACGAAGCCGGATCATCTCTTCCTTCTGGCTCCATCTATGGCTTATGGATCTTGGGGATGGTTTCCAATGGGCAAAAAAAAAAAAAAAA